<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02816

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMDINDLHPPDDYTHRFFIWHEWIQANGPLTSENVFEYFATSMFYDKQSNNQVLRMQTMHTGVAVKDEAAELRRFTGVEFAVVHAQPPAFFVIQKRERLSADEVRPLAAYFIMNNRIYQAPDVYTVLSNRLLTSLSALQSSLDSLRKHRPDYTPRTGFVWPITDPTLSEETSKKGAEAESTLMDATGDPQVPPEKRADAPKRQKNNMLLLNAMRTTAAHSEMSFTASSVALPAENEPDTPVTTTIRSSATPAPIPQESSRALVYQDGPKGLPGAGKKKKKRTSIAPPPAPT
Length290
PositionHead
OrganismHypholoma sublateritium FD-334 SS-4
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Strophariaceae> Hypholoma.
Aromaticity0.08
Grand average of hydropathy-0.552
Instability index47.91
Isoelectric point7.08
Molecular weight32328.14
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364143

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02816
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     169.85|      42|     137|       7|      52|       1
---------------------------------------------------------------------------
    7-   52 (70.95/61.88)	HPPdDYTHRF.FIWhewIQANGPLTSENV...FE..YF.ATSMFYDKQSNNQV
   89-  125 (35.93/20.00)	.........F.FV....IQKRERLSADEVrplAA..YFiMNNRIYQAPDVYTV
  147-  190 (62.96/40.92)	HRP.DYTPRTgFVW....PITDPTLSEET...SKkgAE.AESTLMDATGDPQV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.84|      24|      29|     212|     236|       2
---------------------------------------------------------------------------
  212-  236 (35.95/21.43)	MRTTAAHSEMSfTASSVALPAENEP
  244-  267 (41.89/20.91)	IRSSATPAPIP.QESSRALVYQDGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02816 with Med6 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HSEMSFTASSVALPAENEPDTPVTTTIRSSATPAPIPQESSRALVYQDGPKGLPGAGKKKKKRTSIAPPPAPT
2) PRTGFVWPITDPTLSEETSKKGAEAESTLMDATGDPQVPPEKRADAPKRQKNNMLLLNAMRTTA
218
153
290
216










Molecular Recognition Features






MoRF SequenceStartStop




1) PQESSRALVYQDGPKGLPGAGKKKKKRTSIAPPPAPT
254
290