<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02813

Description Uncharacterized protein
SequenceMALVSVVPAITEGVNSMRFCDVRAPGILSSGREIVEETVACIIEEKIYVAVGKNVDKYKSVLFWALQHSGGKKICIIHVHQPAKMIPVSEMGTKFPASKLEEQEVKAYWEIERKNMEKMLNDYLLLCLQRGVQAEKLYIERDSIEQGILEMISENRIRMLVMGGAADKHYSKKVVDLKSKKAIFVRENAPNTCHTIWFLCKGLLIYTRKLSSDVTDTKVASSSLPASPNLESSENHFRSQSVILRQTSRVKPSTSAPDSLRRVRSENVYGHVGSTLGFPSPDGNEGLSTPWNRSDVEGSSNEWDGLSRSPQNSVLSSSSSNGMADAALVPYMGTEVNGNGLQSSLIPHAEGNFNLSSLPSIQDVTTDNTLYDQLQQVMAEATNSRREAFEEAMKRSEAEKDALVAIRKVKASEILYAQELKQRKEIEEALAKEKDKLGKMKNQRDEVRIELQAALGQKSSLENQIAESEKEVKELQEKIFSAVELLQNYKKERDELQMERDNALKEAEELRKSRAEPSGAHMHQFFTEFSFTEIEEATLNFDPSLKIGEGGYGSIYKGNLRHTTVAIKRLHSNSLQGPSEFQQEVDVLSKMRHPNLVTLIGACPDAWTLIYEYLPNGSLEDRLSCRGNSPPLSWQTRIRLATELCSVLIFLHSSKPHGIVHGDLKPANILLDANFVTKLSDFGICRLLSNNTTICCRTDPKGTFAYMDPEFLSTGELTQKADVYSFGVILLRLLTGRQALGIIKEVQYALDNGNLKNLLDPLAGDWPFVQAEQLANLALRCCEMNRRCRPDLSTDVWRVLEPMRASCGGSSSFQLGSEEQCHPPSYFICPIFQEVMQDPHVAADGFTYEAEALRGWLDSGHDTSPMTNIKLAHSNLVPNLALRSAIQEWLQQH
Length893
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.377
Instability index50.50
Isoelectric point5.88
Molecular weight99795.37
Publications
PubMed=23257886

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02813
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.93|      27|      31|     108|     138|       1
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  112-  138 (47.18/41.00)	ERKNMEK....MLNDYLLLCLQRGVQAEKLY
  140-  170 (41.76/23.42)	ERDSIEQgileMISENRIRMLVMGGAADKHY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     206.73|      51|     313|     217|     273|       2
---------------------------------------------------------------------------
  217-  269 (73.11/52.22)	TKVASSSLPASPN...LESSE...................NHFRSqSVILRQTSRVKPSTSAPdSLRRVRSEN.VY
  299-  371 (62.56/35.02)	SSNEWDGLSRSPQnsvLSSSSsngmadaalvpymgtevngNGLQS.SLIPHAEGNFNLS.SLP.SIQDVTTDNtLY
  532-  576 (71.06/41.17)	TEIEEATLNFDPS...LKIGE...................GGYGS...IYK..GNLRHTTVA...IKRLHSNS.LQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.95|      46|      46|     410|     455|       3
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  410-  455 (72.74/47.21)	KAS.EILYAQELKQRKEIEEALAKEKDKLGKMKNQRDEVRIELQAAL
  458-  504 (66.20/42.33)	KSSlENQIAESEKEVKELQEKIFSAVELLQNYKKERDELQMERDNAL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.79|      47|      85|     648|     696|       4
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  648-  696 (78.53/57.47)	LIFLHSSKPHGIVHG...DLKPANI..LLDAnfVTKLSDFGICRLLSNNTTICC
  731-  782 (71.26/45.43)	LRLLTGRQALGIIKEvqyALDNGNLknLLDP..LAGDWPFVQAEQLANLALRCC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.01|      22|     184|     603|     629|       5
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  603-  629 (40.41/32.03)	C.PDAWTLIYEYL.PNgsledRLSCRGNS
  788-  811 (36.61/18.98)	CrPDLSTDVWRVLePM.....RASCGGSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02813 with Med32 domain of Kingdom Viridiplantae
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