<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02809

Description Uncharacterized protein
SequenceMDQTQRSVAAAANSRTYQFHPARAAITDLFNLYLGVRNSRQKADDSVREPPNKTQKRVLALNRELPPRNEQFLLDFEQLQTQFGDQDQLQSVTESVLISLVIQCCSHAPRAEFLLFALRSLCSIGYVNWDTFLPSLLSSVASAEGPVSQGSQGVPSVSSSVSQSGMLPSTSVIANASNFQSANAASTLTSVHVIGSPAQSTIEPSSGATLSPVKLSDIACNGQPSTTRMDSSIRDNAISNLRQLCCKMILTGLECNLKPVTQAEIFHHMLNWLVNWDQRQHGNEECDGKSWRLEKALIEWLHCCLDVIWLLVEEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNVSVEGVANLRYSPITYPSVLGEPLHGEDLAASIQRGSLDWERALRCIRHAIRSTPSPDWWKRVLVVAPFYRGSVPTPGAVFTCDMICEGTIDRIVELLKLTNSEINCWQEWLVFSDIFFFLMKSGCIDFVDFIDKLGSRLSASDHHILNTNHVTWLLAQIIRVEHVMTALNTDSRKVETTRKILSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTRDYLNNEQLQKGKQIDEWWRQVSKGERMMDYMSMDDKSIGMFWVVSYTMAQPACETVMNWLSSGGVTELLPGANVQPNERFMVMREVSPLPISLLSGFSMNLYLKLVFQMEESLFAGQVVPSIAMVETYTRLLLIAPHSLFRSHFSHLAQRNASLLSKPAVTLLVLEIVNYRLLPLYRYQGKCKPLMYDVTKIISALKGKRGDHRVFRLAENLCINLILSLRDFFSVKREGKGPTEFTETLNRITIITLAITIKTRGIADADHLLYLQTMLEQILATSQHRWSEKTLCYFPSILRDLLMTRTDKRGLAIQEWQQSETTVINQCTQLLSSSTEPNYVMTYLNRSFPQHRQYLCAGAWILMQGHPENINSGNLARVLREFSPEEVTSNIYTMVDVLLHHIHIELQHGHSLQDLLLKTCANLAFFVWTHELIPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKLYCMNRGPPEHWLYTGIFKRSDLQNALGNHLSWKERYPTFFDDIVARLLPVIPLVVYRLIENDAIESADRMLGMYSLFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNPAICPPPEYFATLLLALVNNVIPPLNSNSRTGSMGDASNNSVRGPHNKTPATPQSGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPISASQIVSSLIQIVVNIQPTLIQSSNGLHGASSGAVQGSVLPTSPSGGSTDSAGRSTPSVSGINTSSFVSRSGYTCQQLSCLFIQACGLLLAQLPPEFHLQLYMEASRIIKESWWLTDGKRSLSELDSAVSYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIQQLRPVTSVAMLRIAFRIMGPLLPRLVTAHNLFNKILSLLLNTLVDVFGKNTQPPVPVEASEITDLIDYLHHIIHYEGQAGPVQANSKPRPEVLSICGRAAESLRPDVQHLLTHLKPDVNSSIYAATHPKIAQNPS
Length1603
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.08
Grand average of hydropathy-0.065
Instability index49.09
Isoelectric point6.40
Molecular weight180008.62
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02809
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.20|      25|     542|     984|    1009|       1
---------------------------------------------------------------------------
  984- 1009 (43.21/39.45)	PEEvTSNIYTMVDVLLHHIHIELQHG
 1524- 1548 (47.00/37.37)	PVE.ASEITDLIDYLHHIIHYEGQAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     192.34|      50|     179|     286|     335|       3
---------------------------------------------------------------------------
  286-  335 (93.97/55.96)	CDGKSWR...LEKALIEW...LHCCLDVIWLLVEED.KCRV....PFYELLRSG.LQFIENI
  421-  457 (30.86/13.56)	...............LDWeraLRCIRHAIRSTPSPDwWKRVlvvaPFYR....G......SV
  470-  516 (67.50/38.17)	CEGTIDRiveLLKLTNSE...INCWQE..WLVFSD..........IFFFLMKSGcIDFVDFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.34|      18|      18|     134|     151|       4
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  118-  131 (19.93/ 8.98)	...LRSLCSI.GYVNWDT
  134-  151 (30.60/18.20)	PSLLSSVASAEGPVSQGS
  155-  171 (28.82/16.66)	PSVSSSV.SQSGMLPSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.52|      19|     544|     534|     559|       6
---------------------------------------------------------------------------
  537-  558 (30.04/34.86)	TWLLAQiirVEHVMTALNTDSR
 1212- 1230 (33.49/13.30)	TLLLAL...VNNVIPPLNSNSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.53|      34|     179|    1107|    1145|       7
---------------------------------------------------------------------------
 1107- 1145 (49.73/42.41)	PTFFDDIVARLlpvIPLVVYrlIENDAIESADRMLGMYS
 1292- 1325 (56.80/33.77)	PISASQIVSSL...IQIVVN..IQPTLIQSSNGLHGASS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.35|      24|     122|     670|     699|      24
---------------------------------------------------------------------------
  670-  693 (41.40/33.54)	VTELLPGANVQPNERFMVMREVSP
 1055- 1078 (39.95/18.77)	VISLLDRQELQQRVKLYCMNRGPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02809 with Med23 domain of Kingdom Viridiplantae
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