<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02807

Description Uncharacterized protein
SequenceMALVSVVPAITEGVNSMRFCDVRAPGILSSGREIVEETVACIIEEKIYVAVGKNVDKYKSVLFWALQHSGGKKICIIHVHQPAKMIPVSEMGTKFPASKLEEQEVKAYWEIERKNMEKMLNDYLLLCLQRGVQAEKLYIERDSIEQGILEMISENRIRMLVMGGAADKHYSKYKPHKKVVDLKSKKAIFVRENAPNTCHTIWFLCKGLLIYTRKLSSDVTDTKVASSSLPASPNLESSENHFRSQSVILRQTSRVKPSTSAPDSLRRVRSENVYGHVGSTLGFPSPDGNEGLSTPWNRSDVEGSSNEWDGLSRSPQNSVLSSSSSNGMADAALVPYMGTEVNGNGLQSSLIPHAEGNFNLSSLPSIQDVTTDNTLYDQLQQVMAEATNSRREAFEEAMKRSEAEKDALVAIRKVKASEILYAQELKQRKEIEEALAKEKDKLGKMKNQRDEVRIELQAALGQKSSLENQIAESEKEVKELQEKIFSAVELLQNYKKERDELQMERDNALKEAEELRKSRAEPSGAHMHQFFTEFSFTEIEEATLNFDPSLKIGEGGYGSIYKGNLRHTTVAIKRLHSNSLQGPSEFQQEVDVLSKMRHPNLVTLIGACPDAWTLIYEYLPNGSLEDRLSCRGNSPPLSWQTRIRLATELCSVLIFLHSSKPHGIVHGDLKPANILLDANFVTKLSDFGICRLLSNNTTICCRTDPKGTFAYMDPEFLSTGELTQKADVYSFGVILLRLLTGRQALGIIKEVQYALDNGNLKNLLDPLAGDWPFVQAEQLANLALRCCEMNRRCRPDLSTDVWRVLEPMRASCGGSSSFQLGSEEQCHPPSYFICPIFQEVMQDPHVAADGFTYEAEALRGWLDSGHDTSPMTNIKLAHSNLVPNLALRSAIQEWLQQH
Length898
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.391
Instability index50.45
Isoelectric point6.01
Molecular weight100449.14
Publications
PubMed=23257886

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02807
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     185.71|      53|     114|     345|     397|       4
---------------------------------------------------------------------------
  345-  397 (87.87/63.56)	GLQSSLIPH.AEGNFNLSSLPSIQDVTTDNTLYDQ.LQQVMAEATNSRREAFEEA
  408-  434 (24.77/12.26)	...................LVAIRKVKASEILYAQeLKQ........RKE.IEEA
  461-  512 (73.07/51.53)	GQKSSLENQiAESEKEVKELQ..EKIFSAVELLQN.YKKERDELQMERDNALKEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.32|      17|      17|     290|     306|       6
---------------------------------------------------------------------------
  290-  306 (31.16/17.17)	EGLS.TPWNRSDVEGSSN
  309-  326 (23.17/11.04)	DGLSrSPQNSVLSSSSSN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02807 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HVGSTLGFPSPDGNEGLSTPWNRSDVEGSSNEWDGLSRSPQNSVLSSSSSNG
276
327










Molecular Recognition Features






MoRF SequenceStartStop




NANANA