<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02806

Description Uncharacterized protein
SequenceMNTFFFVVKLGAIRLHIQMDDVAKGIVELIRRHNIKKLVMGAAADEHFSEGMWLMSEKAQYVNENAPFSCQIWFICREHLVHTRFETGQSSNAPSPSGSSYLTSSTEAAGIFGSTVSEEREESECEIELYDVLHSGEEGSSNDQLFDRLEQALKEAESSNQKAFEESDRRVKAEMNATRAMRQAKMLERLYNECKRENETALAKQNESLENIKRLREELSVSREQNSILESQVANSERRMKQLEDELSSALEQLQVSLKERDELQIELENSHKVIEELLRKQAEETSSTHMDQFNLDQLSVSEIHDATLDQLEICQKEKDELQVELENTLRINKELLRKQSEDTSNSHLQQPFIEFSLSEIEEATEDFDQLYKIAEGARGSVYYKCALRHTEVVIKVLGRNSFQDSNEFLREVDDLIKLRHPNLVNLIGACPEKRALVYEYVPNGSLEDHLNSRNDMPPLSWQSRMHIATQLCSTLMFLHAGKLVHGNLKPGNILLDDNFGCKLSDFGSCRAFSLVENSSNMTESSNPNPYLDPDFRNSRRVSHSLDLYPFGIIVLQLLSGRSTQGIAESAQSELLNGGNLSSFLDSSAGNWPHQVAQLTHLAIRCCDINRSRRPDLASDVLKVLETMKPSVASIAYAPESNEDGEPPSYFICPILQAVMSDPHMAADGYTYEATALQDWLADHDTSPMTNLRLPNLNLIPNFPLRSAIQQWQENR
Length716
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.531
Instability index59.89
Isoelectric point4.96
Molecular weight81212.04
Publications
PubMed=23257886

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02806
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     273.68|      54|      56|     259|     312|       1
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  120-  178 (51.82/30.44)	.........REESEC....EIE.LydvlhsgeeGSSNDQL...........FDR.........LEQALKEAESSNQKA....FEESDRRVKAEMNAT
  187-  250 (42.77/23.72)	LERL.ynecKRENETalakQNEsL.........ENIKRLR...........EELsvsreqnsiLESQV.ANSERRMKQ....LE.DELS......SA
  251-  308 (86.24/55.98)	LEQL.qvslKERDEL....QIE.L.........ENSHKVI...........EEL.........LRKQAEETSSTHMDQ....FNLDQLSVSEIHDAT
  309-  365 (66.57/41.39)	LDQL.eicqKEKDEL....QVE.L.........ENTLRIN...........KEL.........LRKQSEDTSNSHLQQpfieF.....SLSEIEEAT
  368-  427 (26.28/11.49)	FDQLykiaeGARGSV..yyKCA.L.........RHTEVVIkvlgrnsfqdsNEF.........LREVDDLIKLRHPNL....VNL............
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02806 with Med32 domain of Kingdom Viridiplantae
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