<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02795

Description Uncharacterized protein
SequenceMEHGPFLQGGLSQVSWFQFHPVESDLSSLPDKRIKVEQKDAATLLVISSHLQLQKEGFLSAWTNSFVGPWDPSQGLHNPDEKIKLWLFIPGRHASVVDSAQSAVSRLRVVASGLWLAPGDSEEVAAALSQALRNRIERALLGLSYMRFGDVFSRYHPPQIEESIRHIRTLSTGDIEKVLEHSSNNTSYLLPVPFAILVFENDFEEACVCALLRGQNCYVKVSLGCSKSRGDKPLNPNPDYIRNLPKHQSTEAYAMGRVDQKGPLDLLSVHEKTFIYPPEAVLVPVLQTSFARSSLRRFWLQNWIGPSLAGSSFFRHCFCSDGNLDILEKSWAEFSGIHTQHCYNSSSNSNNSSISSLSSSSSDSVTTGARDLEADADSSCRQSGLSSNDQMETDCLKLGSKRPRIGMTESYGQAGTVTNAPTEDVYKSNIRSMEVNRAVITGVGNDQIGSNWDWDDDDRGIVMDIQSLLSEFGDFGDFFENDVLPFGEPPGTAESSAIMFGASDCGDVGSSPAGVMDTSDQMLLPVGLPSFDSFNPPLPLVTEEFLSKSQEVTNSAVTSGPSNQTPASSTGEFDHLMKAEALMTFAVEYGAVETPASDSSSVFRNPYLPKSRKVESSNSSQSNYKYAATPPSFPCFGGLDEKTGMPMNLKAHPGGHDSNSMLQLKKYYTHVETREERYGRRLLTHNDSNATNEMSGTSQFGNLYSIKSDKSASRKMTQGVFGGERILLSMKTVLGTEVECSMFQASMLRMRHILLSPTSPATINLSRPTASSVLNQLPDDPSTMADNLSSRYEVKKESIPFKSAGDIDGVMLDGHLNAPVGVWRTVGAPKVSKLATSSIEASPSLTHNLYNEESMLSYGQSQPLQELLDGIPLLVQQATSFVDLALDADGGDCPYSWLALQEHWRRGFCCGPSMVHAGCGGTLASCHSLDIAGVELVDPLSANIHASSVISLLHSDIKSALKSAFGSLDGPLSVTDWCRGRGQSGDVGASADGSSTESNISECRDSSSTVTLSVGEAVSPSQTSVGGSSYLKGVFLIDAMAVAIDGGKVDETSQRRLNQETSGSELEQQQSSRLRSTLFVLPSPALLVGYQDDWLKTSGNSLQLWEKAPLEPYALPKPINYSVICPDIDPLTSAAADFFQQLGIVYETCKLGTHSPQSLGNQMEIDSGKWFSSGFVLLDCPQSMKIESSNASLLGSISDFFLSLSNGWDMTCYLKSLSKALKALKIGQFLFTNQKEGISSPCLVIYVVCPFPEPTAVLKTVIESSIAVGSIILPSDRDKRSLLHSQIGKALSSSAAADEASVSNIPVVSGFSVPKVVVQIVTVDAIFRVTSPPFNELIILKEMAFTVYNKARRISRGSMNDLALSSSLSRSHSVLTPMTSIPTMWKDSVGSRIPGSSIPREGEIDSSLRGGAWENSWQTRTGGLSCDPNRNGDFFYPDEVRYMFEPLFILAESGSLEHGVSPTAFGNSTSETSKIVSDESGGGFMQAANSVGSTDPGSGSQHVGLEPDGLDSSNQKIPSLHCCYGWTEDWRWLVCIWTDARGELLDCNIFPFGGISSRQDTKGLQCLFVQVLQQGCHILQACTSSDTGVVNRFTIFWNS
Length1599
PositionKinase
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.08
Grand average of hydropathy-0.222
Instability index50.02
Isoelectric point5.10
Molecular weight173193.38
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02795
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     195.95|      56|      68|     654|     711|       1
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  612-  642 (24.00/ 7.30)	...............................RKVESSNSSQSNYKYAATPPsfpcFGGL.....DEK
  654-  711 (90.95/55.51)	GGHdsNSMLQLKKYY.THVETREERYG....RRLLTHNDSNATNEMSGTSQ....FGNLYSIKSDKS
  722-  782 (81.00/43.87)	GGE..RILLSMKTVLgTEVECSMFQASmlrmRHILLSPTSPATINLSRPTA....SSVLNQLPDDPS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.10|      10|      21|     244|     253|       2
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  244-  253 (18.40/10.94)	LPKHQSTEAY
  267-  276 (17.71/10.27)	LSVHEKTFIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.99|      44|     327|     148|     192|       3
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  149-  192 (78.15/43.63)	GDVFSRYHPPQIEESIRHIR......TLSTGDIEKVLEHSSNNTSYLLPV
  985- 1034 (62.84/32.92)	GDVGASADGSSTESNISECRdssstvTLSVGEAVSPSQTSVGGSSYLKGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.47|      20|     327|     944|     963|       4
---------------------------------------------------------------------------
  944-  963 (34.90/25.88)	IHASSVI........SLLHSDIKSALKS
 1266- 1293 (27.57/18.58)	IAVGSIIlpsdrdkrSLLHSQIGKALSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.51|      14|      68|     526|     539|       5
---------------------------------------------------------------------------
  526-  539 (30.02/15.27)	VGLPSFDS...F.NPPLP
  592-  609 (19.49/ 7.23)	VETPASDSssvFrNPYLP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.41|      22|     589|     277|     319|       6
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  277-  318 (24.44/54.73)	PPEavlVPVLQTSFAR.SSLRRfwlqnwigpslagssffRHCF
  321-  343 (36.97/16.03)	DGN...LDILEKSWAEfSGIHT.................QHCY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.42|      26|      68|     843|     873|       7
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    5-   30 (48.91/22.89)	PFLQGGL....SQVSWFQFHPVESDLSSLP
  843-  872 (41.51/30.94)	PSLTHNLyneeSMLSYGQSQPLQELLDGIP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.52|      28|    1355|      53|      90|       9
---------------------------------------------------------------------------
   61-   90 (50.84/40.94)	AWTNSF...VGPW..DPSQG..LHNPDEkIKlWLFIP
 1412- 1446 (44.67/16.24)	AWENSWqtrTGGLscDPNRNgdFFYPDE.VR.YMFEP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     163.67|      57|     660|     461|     522|      10
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  461-  498 (56.11/27.28)	............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IVMDI...QSLLSEFGDF....GDFFENDVLPFGEPPGTAESSAI
  504-  522 (16.55/ 9.19)	DCGDVGSSPAGVMDTSDQM......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1124- 1165 (49.26/22.79)	...................llpvglpsfdsfnpplplvteeflsksqevtnsavtsgpsnqtpasstgefdhlmkaealmtfaveygavetpasdsssvfrnpylpksrkvessnssqsnykyaatppsfpcfggldektgmpmnlkahpgghdsnsmlqlkkyythvetreerygrrllthndsnatnemsgtsqfgnlysiksdksasrkmtqgvfggerillsmktvlgtevecsmfqasmlrmrhillsptspatinlsrptassvlnqlpddpstmadnlssryevkkesipfksagdidgvmldghlnapvgvwrtvgapkvsklatssieaspslthnlyneesmlsygqsqplqelldgipllvqqatsfvdlaldadggdcpyswlalqehwrrgfccgpsmvhagcggtlaschsldiagvelvdplsanihassvisllhsdiksalksafgsldgplsvtdwcrgrgqsgdvgasadgsstesnisecrdssstvtlsvgeavspsqtsvggssylkgvflidamavaidggkvdetsqrrlnqetsgseleqqqssrlrstlfvlpspallvgyqddwlktsgnslqlwekaplepyalpkpinysvICPDI...DPLTSAAADFfqqlGIVYETCKLGTHSPQSLGNQMEI
 1166- 1201 (41.75/15.24)	DSGKWFSSGFVLLDCPQSM..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................kieSSNASLLGSI....SDFF...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.22|      26|     874|     210|     236|      11
---------------------------------------------------------------------------
  210-  236 (45.97/30.79)	ALLRG.QNCYVKVSlGCSKSRGDK.PLNP
 1085- 1112 (41.25/22.91)	ALLVGyQDDWLKTS.GNSLQLWEKaPLEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.66|      15|     511|     371|     385|      12
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  371-  385 (27.95/15.13)	DLEADAD.SSCRQSGL
  883-  898 (26.72/14.12)	DLALDADgGDCPYSWL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.16|      34|     100|    1363|    1396|      13
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 1363- 1396 (60.38/37.31)	ALSSSLSRSHSVLTPMTSIPTMW.KDSVGSRIPGS
 1464- 1498 (54.78/33.04)	AFGNSTSETSKIVSDESGGGFMQaANSVGSTDPGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02795 with Med13 domain of Kingdom Viridiplantae
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