<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02790

Description Uncharacterized protein
SequenceMAADFWVSSHYERWIVDRATLHQARAEDIQFAENPEYLDYLPIYFANLITKLGKKLQFRQRIIATATVFFRRFYLKNSYCETDPFTVIAACCYLAAKAEESPVHIKVIVAESKSLFSQESYGSRPFSSDNGKIAEMEFYLVDDLECDLVVFHPYRTLLSLCKKEASDSSSSEEGETEDLGVGIGPDDGPRYWGTGDGQLEFTPAALQTAWSIINDSYRSQLCLLYPPHLIAIAAIYLTFILHPPTRPDSSPVAAEHISADGARRRSSRQAHNPPRAAATPKKPQDPIAFLADLNVSLPAVAAIAQEIISMYTLWDRYSEDSMCGVPGVGTPSGEGADADGGPDGGHITPSFLSAVLLRMREARVMDASPIAPSVSRPVAVNKRLERAQAAG
Length391
PositionKinase
OrganismHypholoma sublateritium FD-334 SS-4
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Strophariaceae> Hypholoma.
Aromaticity0.09
Grand average of hydropathy-0.183
Instability index53.88
Isoelectric point5.28
Molecular weight42999.10
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02790
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.28|      38|      94|     247|     288|       1
---------------------------------------------------------------------------
  247-  288 (61.14/43.60)	PDSSPVAAEHISADGARRRSSRQAHNPPRAAATPKkpqdPIA
  342-  379 (66.14/37.79)	PDGGHITPSFLSAVLLRMREARVMDASPIAPSVSR....PVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.03|      51|     141|      39|      94|       2
---------------------------------------------------------------------------
   39-   94 (80.54/68.54)	DYLPIYFAnliTKLGkKLQFRQRIIATATVFFRRFYlKNSYCETDPFTVIA.ACCYL
  186-  237 (91.49/60.30)	DDGPRYWG...TGDG.QLEFTPAALQTAWSIINDSY.RSQLCLLYPPHLIAiAAIYL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02790 with CycC domain of Kingdom Fungi
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