<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02786

Description Uncharacterized protein
SequenceMLLSITTLVVANIVEEEESELIDETDGSPSNPTKEKQTTGRCRKGLISSLQMLGDYEALLTPPQAVCSVANQAAAKAIMFHSGRTVGNGYYECMSINDMPMNCSGNLRHLIIEACISRNLLDTSAYLWPGYVNVRANIPLSVPSQVPGWSSLMKGSPLTPTLINALVATPASSLPEIEKIYEIATKGSDDEKISAASILCGASLVRGWNIQEQVVLFIISLLSPPVPADYSGSESHLIRYAPFFNVLLVGISPVDCIQIFSLHGMVPLLAGALMPLCEVFGSTAPNGSWTLPTGEELTSHAVFSNAFTILLMLWKFDHPPVEHVMRDATPVGSERSPDYLLLVRNSKLSAFGKSAKDHLKIRRMSKILNFCMEPIFMDSFPKLKRWYRQHQKCIASTLSGLVQGTTVHQIVDALLNMMFRKIGRAAQSSTSTTSGSSSSSASGAEDILARLKVPAWDILEGAPYVLDAALTACAHGRIAPRELATGLKDLADFLPATLGTIISYFSAEVTRGIWKPVFMNGTDWPSPLANLSVVLQQIKKFIAATGVDVPSLETGGSSPAMLPLPLAALVSLTITYKLDKSSERYLVLLGPAMSSLGGSCPWPCMPIISALWAQKVKRWNDFLVFTSARTVFHHNSDAVVQLLRSCFTATLGLSPSIMCSNGGVGALLGHGFGSHFSGGMAPVSPGIMYLRSHRTIRDIMFMTEEIVSLLMFSVKEIASRLSQEKMEKLKKTTFGLRYGQVSLGTAMTRVKLAASLGASLVWLSGGLSLVQSLIKETLPSWFISAHTPELDRGEPGGVVSMLRGYALAYFAVLCGTFAWGVDSVSPESRRRPKVLDSHLEFVASALDGKISLGCDYATWRAYVTGFVSLMVGCTHKWVLDVNVDVLKRLSDGLRQWNEEELAIALLGLGGATATGTAAELIVEIGA
Length926
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.08
Grand average of hydropathy0.219
Instability index47.11
Isoelectric point7.25
Molecular weight99961.89
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02786
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.48|      37|     152|     625|     665|       1
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  625-  665 (59.98/39.74)	FTSART..VFHHNSDAVVQLLRSCFTATLglspSIMCSNGGVG
  782-  820 (59.50/30.86)	FISAHTpeLDRGEPGGVVSMLRGYALAYF....AVLCGTFAWG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.08|      25|     157|     595|     619|       3
---------------------------------------------------------------------------
  595-  619 (51.26/28.55)	SLGGSCPW..PCMPIISALWAQKVKRW
  755-  781 (38.82/19.88)	SLGASLVWlsGGLSLVQSLIKETLPSW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.18|      28|     404|     136|     167|       4
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  136-  167 (45.61/31.57)	ANIPLSVPSQVPGWSSlmkgSPLTPTLINALV
  543-  570 (48.57/24.80)	AATGVDVPSLETGGSS....PAMLPLPLAALV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.63|      14|      16|     338|     351|       8
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  338-  351 (23.51/19.67)	DYLLLVRNSKLSAF
  357-  370 (25.12/21.61)	DHLKIRRMSKILNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.31|      11|      15|     274|     284|       9
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  274-  284 (20.97/11.58)	MPLCEVFGSTA
  291-  301 (19.33/10.13)	LPTGEELTSHA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.17|      13|      15|     462|     474|      10
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  462-  474 (22.64/15.60)	APYVLDAALTACA
  479-  491 (21.54/14.45)	APRELATGLKDLA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02786 with Med33 domain of Kingdom Viridiplantae
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