<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02784

Description Uncharacterized protein
SequenceMRPPRGRGGGGGGFRGRGDGGRGRGRGGGGRGGDRGGSAMKSRGGGRGGGRGGGRGRGGMKGGSKVIVEPHRHEGVFVAKGKEDALVTKNMVPGEAVYNEKRIAVQNEDGTKIEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVVGGYRMPKKQKAAT
Length304
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.413
Instability index34.75
Isoelectric point10.20
Molecular weight32335.61
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02784
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.70|      14|      17|      20|      36|       1
---------------------------------------------------------------------------
   20-   36 (27.41/12.52)	GGRGRGrggGGRGGDRG
   39-   52 (29.29/ 7.49)	AMKSRG...GGRGGGRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.72|      22|      23|     162|     184|       2
---------------------------------------------------------------------------
  163-  184 (39.77/28.77)	GPTGVVYAVEFSHRSG..RDLVNM
  187-  210 (32.94/18.03)	KRTNVIPIIEDARHPAkyRMLVGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.19|      55|     159|      75|     132|       3
---------------------------------------------------------------------------
   75-  132 (85.48/73.11)	GVFVAKGKEDALvtKNMVPGEAVYNEKRIAVQNEDGTKIEYRVWNPFRSKlAAAILGG
  239-  293 (96.71/70.94)	GHFVISIKANCI..DSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERD.HACVVGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02784 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRPPRGRGGGGGGFRGRGDGGRGRGRGGGGRGGDRGGSAMKSRGGGRGGGRGGGRGRGGMKGGSKVIVEPHRHE
1
74










Molecular Recognition Features






MoRF SequenceStartStop




1) MRPPRGRGGGGGGFRGRGDGGRGRGRGGGGRGGDRGGSAMKSRGGGRGGGRGGGRGR
1
57