<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02783

Description Uncharacterized protein
SequenceMQRYHAPSCTSAVNNSAIGGASVRDTPRADSSSLPPNFSLNSRRQSQLAPYKLKCDKEHLNSRLGPPDFHPQTQNCPEETLTRENVQHGYKDTIDGLEDSKEISLTQVQAFTKPVVLKCRDAIRKCLRAINESRAQKRKAGQVYGVPLSGSLLSKPGVFPEQRPCNEDFRKKWIEGLSLQHKPLCSLADQVPLGYKKRPLIEVLIRNNVPLLKATWFIKVTYLNQVRPGSAISSGAPDKTQLSRTELWTKDVIDYLQYLLDEFFSRNNSHSTQHGRDRLPQIHYAGSLQHRSDLAPAVIDGEEPSLHFKWWYVVRLLQWHHAEGLVLPSLIIDWVLNQLQEKDLLEILQLLLPIIYGVLETIILCQTYVRNLVGVAIRFIREPSPGGSDLVDNSRRAYTISALVEMLRYLIQATPDTFVALDCFPLPTCVLSHTPSDGGFLSKPSDDAAKKNYTADAYAVRGKGFDSQYQSLSFNHVVSTVEKRADNLAKGATAGYPSQSVAKAVQTLDKALLQGDVIDAYKHIFNDLYDGAVGEGWVAEVSPSLRSSLKWLQTVNLSLICSVFFLCEWATCDYRDFRTAPPSDVKFTGSKDFSQIYLAIQLLKLKMKELQKKLKKGRASRKNTSQQNSYSSKDLLGDTHEAKSNGKGLNGRRRNFSDIFDSPGPLHDIIVCWIDQHEGHKGEGSKRLQLFMLELIRSGIFYPQAYVRQLLVSGIIDTNGPMADLNRRKRHQRILKQLPGQFMLNALEEARIAEGSELLEAINVYSNERLLVLQELFFDSYNNTNNSHALAKKLNCRPTLGRDVDSQVSCDKRRTVQASKTFRREVGLEELKASISVLLQFPSSSFCSADSGEDESQGSIKRSIGSTHSKMDSVEGTPGCEDCKRVKRLKLSEDETSCLKVYSPIPSDDDDTWWVRKGPKNLEGSKVDPLLKSTKQASRGRQKPVRKTQSLAQLAAARIEDSQGASTSHVCDNKISCPHHRTEVENLKPVDGIRTTHHADIISIGRGLKQLRFVEKRVVTIWLLSVVRQLVEESEKSVPKASQYGRPFVAADEKSPLRWKLGEDELSAILYLLDVSCDSASAVKFLLWLLPKAISNPSPAIHGGRNILMVPRNVENYACEVGEAYLLSSLRRYENILIAADLVPEALSATMRHVASFMATNGRITGSGALVFACYLLRRYGSIASVIEWEKNFKETCDKRLLSELESGRTEGEFGFPHGVPAGTEDPDDYCRQRINVGRLSRAGVSMRDMVQRRIDDVLHYILGKERKHFAANTQRSPATEKGDDDYQVAQQIIMGLMDCFRQTGGAFQEGDPGLVSSAVSAIVSNVGPTLAKIPDFTSGSTYSNYQPPMNYLNFAKRLLHIHLICLCLLKEALGERKSQAFEIALATEAFSALAVAFAPAKSSRGQLLSPDSLDSHANISNDNSHSSAKATLGRTTKMAAAVSALVIGAIIHGVISLERMVSVLRLKEGLDVVQFVRSTKTSSNGNARSVGAFKVDNSVEVYVHLFRLFVGNCRTVCDGLVLELLGEQSVLALSRMQRLLPINLVFPPAYAIFAFMIWKPFILNSNTARSEDIQQLYQSLTVAIGDAIKHRPFRDVCMRDTRGFYDIVAADTTDAEFAAMLELNGLDMHLKSMDDGNRVSGHSESKALRAETSKLLDKLVCALDTIQPAKFHWQWVELRLLLNEQALIDKIENHDMSIVDAIRSSSPSSERATPSESEKVFIEIILTRLLVRPDAAPLFSEVVHLFGRSLEDSMLMQAKWFLGGLDVLLGRKTVRQRLSNIAENKNLSTKSQFWKPWGWSYSGVDPVTNSGEKRKSEVTSLEEGEVIEEGMESKGCVKGSTQVDIEGSGINQQHVTEKAFIELVIPCIDQSSADSHNTFASDLIKQFNTIEQQINSVTRGVSKQTGTASSGIEGPTNKINNRKGIRGGSPGLAKRTPAPVESAPPPSPAALRASMSLRLQFIVRLLPIICADGEPSARSMRNMLASVILRLLGSRVVHEDVDLSSNLAQLKRDMELMPVVASTEMSGDSLFDRLLLVLHGLLSSCKPSWLKSKDAKDFSGFDREAVEGLQNELDSMQLPEMIRWRIQAAMPILFPSFHNTVSCQPPSVPIGALSLLQPSICVPGSYTGTINPSQRQVASARNANNMPGKSKSVLSQENDMEIDPWTLLEYGAGSGPSSSSTAAIGGSDNANLRASSWLKGAVRVRRTDPSYIGAVDDDS
Length2220
PositionKinase
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.283
Instability index47.69
Isoelectric point8.51
Molecular weight245739.37
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02783
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     696.90|     227|     601|    1093|    1366|       1
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  481-  731 (356.59/247.88)	VEKRADNLAKGATAGYPSQSVAKAVQTLDKALLQGDVIDA.YKHIFNDL.YDGAV.GEGWVAEVSPSLR......SSLKWLQtvNLSLICSVFFLCEWATcDYRDFRTAPPSDVKfTGSKDFSQiYLaiqllklkmkelQKKLKKGRASRKNTSQQNSYSSK..D....LLGD..THEAksngkgLNGRRRNFSDIFDSPGPL.HDIIVCWID...QHEGHKGEGSKRLQLFMLELIRSGIFYPQAYVRQlLVSGIIDTN..GPMADLNRRKR..H
 1110- 1361 (340.31/330.06)	VPRNVENYACEVGEAYLLSSLRRYENILIAADLVPEALSAtMRHVASFMaTNGRItGSGALVFACYLLRrygsiaSVIEWEK..NFKETCDKRLLSELES.GRTEGEFGFPHGVP.AGTEDPDD.YC............RQRINVGRLSRAGVSMRDMVQRRidDvlhyILGKerKHFA......ANTQRSPATEKGDDDYQVaQQIIMGLMDcfrQTGGAFQEGDPGLVSSAVSAIVSNVGPTLAKIPD.FTSGSTYSNyqPPMNYLNFAKRllH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     379.20|     100|     717|      75|     215|       3
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   75-  178 (165.22/114.22)	NCPEETLTRE...NVQHGYKDTIDGLED.SKE...IS....LTQVQAFTKPVV.LKCRDAIRKCLRAINESRAQ...KRKAGQVYGVPLSGSLLSKPGVfpeqRPCNEDFRKKWIEGLS
  795-  896 (137.86/82.28)	NC.RPTLGRDvdsQVSCDKRRTVQASKTfRRE...VG....LEELKA.SISVL.LQFPSS.SFCSADSGEDESQgsiKRSIGSTHS..KMDSVEGTPGC....EDCKRVKRLKLSEDET
  976- 1048 (76.12/74.50)	SCPHHRTEVE...NLK.....PVDGIRT.THHadiISigrgLKQLRFVEKRVVtIWLLSVVRQ...LVEESEKS...VPKASQ.YGRPF..............................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.71|      52|    1737|     379|     445|       4
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  379-  445 (81.37/79.85)	FIREPSPGGSDLVDNSRraytisaLVEMLRYLIQAT.....PDTFVALDCFP..LPTCVLShtpsdggfLSKPS
 2062- 2120 (85.34/52.08)	FDREAVEGLQNELDSMQ.......LPEMIRWRIQAAmpilfPSFHNTVSCQPpsVPIGALS........LLQPS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.25|      25|     875|    1084|    1108|       5
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 1084- 1108 (45.34/27.82)	KFLLWLLPKAISNPSPAIHGGRNIL
 1961- 1985 (44.91/27.47)	QFIVRLLPIICADGEPSARSMRNML
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     226.99|      73|      91|     180|     260|       6
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  180-  260 (111.58/94.34)	QHKplcslADQVP.LGY.....KKRPLIEVLIRNNVPLLKATWFIKVTYLN.QVRPGSAISSGAPDKTqLSrtELWTKDVIDYLQYLL
  273-  352 (115.40/74.75)	QHG.....RDRLPqIHYagslqHRSDLAPAVIDGEEPSLHFKWWYVVRLLQwHHAEGLVLPSLIIDWV.LN..QLQEKDLLEILQLLL
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.70|      59|     609|     734|     792|       7
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  734-  792 (98.13/60.94)	ILKQLPGQFMLNALEEARIAEG.SELLEAINVYSNERLLVLQELFFDSYNN..TNNSHALAK
 1369- 1430 (86.57/52.85)	LLKEALGERKSQAFEIALATEAfSALAVAFAPAKSSRGQLLSPDSLDSHANisNDNSHSSAK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02783 with Med12 domain of Kingdom Viridiplantae
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