<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02782

Description Uncharacterized protein
SequenceMGDGNNTSGRGIAANNTPSGNSEKPEWLQQYNLLGKIGEGTYGLVFLARIKSPTNRGKCIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEYDLYEIIKHHRDKVNHAMNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSTPNPFQLDQLDKIFKILGHPTLEKWPTLASLPHWQSDVQHIQSHKYENAGLHSVVHLSPKSPAFDLLSRMLEYDPRKRITAAQALEHEYFRIEPLPGRNALVPSQPGEKIVNYPTRPVDQNTDFEGTTSIQQPPQPVSSGNVAGGMGAHVGRNGSVNRPMPPPPMQRMPQGIMAYNFSSQAGVGGGINPGGMPMQRNLAAQAHQQQQLRRKDPGMGMTGYPPQQKSRRM
Length480
PositionKinase
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.08
Grand average of hydropathy-0.452
Instability index39.33
Isoelectric point9.25
Molecular weight53403.49
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02782
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.69|      28|      42|     169|     198|       2
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  169-  198 (43.53/36.53)	LVMGEGEEQGVVKIADFGLarIYQA..PLKPL
  214-  243 (45.16/31.04)	LLLGAKHYTSAVDMWAVGC..IFAEllTLKPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.56|      28|      28|     381|     408|       3
---------------------------------------------------------------------------
  381-  408 (50.50/25.89)	IQQPPQPV...SSGNVAGGMGAHVGRNGSVN
  409-  439 (49.06/24.96)	RPMPPPPMqrmPQGIMAYNFSSQAGVGGGIN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02782 with CDK8 domain of Kingdom Viridiplantae
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