<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02778

Description Uncharacterized protein
SequenceMQPPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPGSIPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQPDQVTVQPTPVSVEQLAGTDWALVTTNDGKKYYYNSKTKISSWQIPNEVTELRKKQDSEVSKENAVSVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVPGSSSALDLIKKKLQDPGVPSSSPVPVVPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEALDRKDRELLLNERVLLLKRAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKCVKHEDREVLFNEYISELKAIEEKAERKDKVKKEEEEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKLFREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
Length736
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.05
Grand average of hydropathy-0.847
Instability index53.12
Isoelectric point8.90
Molecular weight81778.87
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02778
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.38|      16|      18|       3|      18|       1
---------------------------------------------------------------------------
    3-   18 (28.75/15.42)	PPPLPVPQGA...LSSSAS
   23-   38 (23.99/11.67)	PNPQLVQNAQ...IQPSKS
   59-   77 (19.63/ 8.24)	SGPLPVHNSSeftMNASTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     353.60|      51|      58|     557|     607|       2
---------------------------------------------------------------------------
  332-  369 (44.90/24.76)	................KEECIMQFKEMLKERG.V..APFS...........KWEKELPKIVFD.....PRFKA
  386-  438 (62.08/37.21)	TRAEEE...RKEKRAAQKAAIEGFKQLLDEAS.EdiDHDT...........NYQTFKRKWGSD.....PRFEA
  445-  493 (44.33/24.35)	ELLLNE...RVLLLKRAAEEKA.......RAI.R..AAAA...........SSFKSMLKEKGDinvnsRWSRV
  499-  534 (39.63/20.95)	DDP........RYKCVKHE...DREVLFNEYI.S..ELKA.............IEEKAE.RKD.....K....
  557-  607 (79.67/49.96)	EEQEME...RVRLKVRRKEAVASFQALLVETI.K..DPQA...........SWTESKPKLEKD.....PQGRA
  613-  675 (48.11/27.09)	DSSDMEklfREHIKMLFERCVNDFRALLAEVItQ..DATAqeteggktalnSWSTAKRLLKPD.....PR...
  678-  716 (34.87/17.50)	.............KMPRKEREALWRRY.AEDM.L..RKQK...........SALDQEEEKHTD.....VKGR.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.51|      53|      60|     158|     215|       3
---------------------------------------------------------------------------
  158-  215 (78.60/61.81)	VSVEQlAGTDWAL..VTTNDGKKYYYNSKTKIsswqIPNEVTEL...RKK.QDSEVSKENAVSV
  220-  278 (75.91/45.63)	VVAEK.GSTPISLsaPAVNTGGRDAMPLRTSV....VPGSSSALdliKKKlQDPGVPSSSPVPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.49|      19|      20|      91|     110|       4
---------------------------------------------------------------------------
   91-  110 (35.35/25.92)	PPFPMSSGS....SGTSGTPGhPG
  113-  135 (31.15/17.12)	PSIQMITASaavdSPSSAVPG.PG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02778 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKGSTPISLSAPAVNTGGRDAMPLRTSVVP
2) ITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKER
3) KQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
4) LIKKKLQDPGVPSSSPVPVVPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQF
5) MQPPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPGSIPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQPDQVTVQPTPVSV
6) QIPNEVTELRKKQDSEVSKENAVSVPNIDVV
223
644
698
260
1
191
252
684
736
339
160
221










Molecular Recognition Features






MoRF SequenceStartStop




1) ALWRRYAE
2) FGRYSS
3) GKKYYYN
4) KIVFDPRFKA
5) SALDLIKKKLQD
686
722
176
360
256
693
727
182
369
267