<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02778

Description Uncharacterized protein
SequenceMQPPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPGSIPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQPDQVTVQPTPVSVEQLAGTDWALVTTNDGKKYYYNSKTKISSWQIPNEVTELRKKQDSEVSKENAVSVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVPGSSSALDLIKKKLQDPGVPSSSPVPVVPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEALDRKDRELLLNERVLLLKRAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKCVKHEDREVLFNEYISELKAIEEKAERKDKVKKEEEEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKLFREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
Length736
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.05
Grand average of hydropathy-0.847
Instability index53.12
Isoelectric point8.90
Molecular weight81778.87
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02778
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.38|      16|      18|       3|      18|       1
---------------------------------------------------------------------------
    3-   18 (28.75/15.42)	PPPLPVPQGA...LSSSAS
   23-   38 (23.99/11.67)	PNPQLVQNAQ...IQPSKS
   59-   77 (19.63/ 8.24)	SGPLPVHNSSeftMNASTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     353.60|      51|      58|     557|     607|       2
---------------------------------------------------------------------------
  332-  369 (44.90/24.76)	................KEECIMQFKEMLKERG.V..APFS...........KWEKELPKIVFD.....PRFKA
  386-  438 (62.08/37.21)	TRAEEE...RKEKRAAQKAAIEGFKQLLDEAS.EdiDHDT...........NYQTFKRKWGSD.....PRFEA
  445-  493 (44.33/24.35)	ELLLNE...RVLLLKRAAEEKA.......RAI.R..AAAA...........SSFKSMLKEKGDinvnsRWSRV
  499-  534 (39.63/20.95)	DDP........RYKCVKHE...DREVLFNEYI.S..ELKA.............IEEKAE.RKD.....K....
  557-  607 (79.67/49.96)	EEQEME...RVRLKVRRKEAVASFQALLVETI.K..DPQA...........SWTESKPKLEKD.....PQGRA
  613-  675 (48.11/27.09)	DSSDMEklfREHIKMLFERCVNDFRALLAEVItQ..DATAqeteggktalnSWSTAKRLLKPD.....PR...
  678-  716 (34.87/17.50)	.............KMPRKEREALWRRY.AEDM.L..RKQK...........SALDQEEEKHTD.....VKGR.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.51|      53|      60|     158|     215|       3
---------------------------------------------------------------------------
  158-  215 (78.60/61.81)	VSVEQlAGTDWAL..VTTNDGKKYYYNSKTKIsswqIPNEVTEL...RKK.QDSEVSKENAVSV
  220-  278 (75.91/45.63)	VVAEK.GSTPISLsaPAVNTGGRDAMPLRTSV....VPGSSSALdliKKKlQDPGVPSSSPVPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.49|      19|      20|      91|     110|       4
---------------------------------------------------------------------------
   91-  110 (35.35/25.92)	PPFPMSSGS....SGTSGTPGhPG
  113-  135 (31.15/17.12)	PSIQMITASaavdSPSSAVPG.PG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02778 with Med35 domain of Kingdom Viridiplantae
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