<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02776

Description Uncharacterized protein
SequenceMAEKQLIVAVEGTAAMGPYWQIILSDYLEKIIRCFCSNEFAGQKNTTSNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAANGNQTHQIADGQRHCILVAASNPYPLPTPVYRPQTQNLEQSENMESQTESRLSDAETVAKSFPQCSVSLSVICPKQLSKLKAIYSAGKRNPRASDPPVDNVRNPQFLVLISENFMEGCAALSRSGVPSLAPNQSPVKMDMASVNAVAGTPPTSVPSVNGSIMSRQPVSAGNVPTATVKVEPTTITSMANGPAFPHIPSVPRAPFQAVPMLQTSSPLTTTEEVMRSSDNVQEIKPSVGGMTQPLRPVPPAAANVNILNNLSQARVMNSAALSGGTSIGLQSMGQTPVAMHMSNMISSGMTSSVPLAQTVFSSGQSGMTSLPGSGAVTGTTQVPPNSNLNSFASATSNVAGNSNIGISQPMCNVQGAVSMGQSVPGSMSQGNHSGAQLVQTGVAMSQSMSGLGPSTVSSGTGTLIPAPGMSQQVQSGMQTLGVNNNSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLASDWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLMLSVSDKAYRLIGMLFPGDMVVFKPQISSQHQQQQQQMQPLLQQQQMPQQQLPQLQQQQQQQQQLPQLQQQQQQQPQQQQPLPHLQQQQLPQLQQQQQQQQQLSQLQQQQMPQLQQQPQLAQMQQQQQQMVGSGMNSAYVQGPGRSQLVSQGQVSSQAPSNMPGGGFMS
Length834
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.04
Grand average of hydropathy-0.332
Instability index65.82
Isoelectric point8.45
Molecular weight89347.17
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02776
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     176.63|      26|      26|     726|     751|       1
---------------------------------------------------------------------------
  690-  712 (46.23/12.00)	PQISSQHQ............QQQQ....QMQPL..LQ..QQQ.M
  731-  755 (46.06/11.93)	PQLQQQQQ............QQPQ....QQQPLPHLQqqQ...L
  756-  785 (50.69/13.85)	PQLQQQQQ............QQQQlsqlQQQQMPQLQ..QQPQL
  786-  823 (33.64/ 6.80)	AQMQQQQQqmvgsgmnsayvQGPG....RSQLVSQGQ..VSSQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     138.33|      28|      28|     386|     413|       2
---------------------------------------------------------------------------
  386-  413 (52.77/24.23)	GGTSIGL.QSMGQTPVAMHMSNMISSG.MT
  419-  440 (24.73/ 6.87)	AQTVF....SSGQS....GMTSLPGSGaVT
  463-  491 (33.90/12.55)	GNSNIGIsQPMCNVQGAVSMGQSVPGS.MS
  557-  580 (26.92/ 8.23)	QQTSSAL.QSAQSKYVKVWEGNL..SG...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.09|      27|      29|     265|     292|       3
---------------------------------------------------------------------------
  265-  292 (44.71/24.09)	P.TSV..............PSV.NGSIMSRQPVSAgNVPTATVK
  295-  319 (42.77/18.86)	P.TTI..............TSMaNGPAFPHIP....SVPRAPFQ
  329-  363 (22.62/ 6.55)	PlTTTeevmrssdnvqeikPSV.GG..MT.QPLRP..VPPA...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.80|      23|      69|     136|     159|       4
---------------------------------------------------------------------------
  136-  159 (42.17/22.61)	NPYPLPTP...VYRPQTQNLeQSEN.ME
  204-  230 (34.63/14.46)	NPRASDPPvdnVRNPQFLVL.ISENfME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.13|      21|      41|     492|     512|       5
---------------------------------------------------------------------------
  492-  512 (35.61/17.75)	QGNHSGAQL..VQTGVAMSQSMS
  517-  535 (26.14/10.85)	STVSSGTGT..LIPAPGMSQQ..
  537-  556 (20.38/ 6.65)	...QSGMQTlgVNNNSAASMPLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02776 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PFQAVPMLQTSSPLTTTEEVMRSSDNVQEIKPSVGGMTQPLRPVPPAAAN
2) QSMSGLGPSTVSSGTGTLIPAPGMSQQVQSGMQTLGVNNNSAASMPLSQQ
3) SGVPSLAPNQSPVKMDMASVNAVAGTPPTSVPSVNGSIMSRQPVSAGNVPTATVKVEPTTITSMANGPAFPHIPS
4) VGSGMNSAYVQGPGRSQLVSQGQVSSQAPSNMPGGGFMS
317
509
238
796
366
558
312
834










Molecular Recognition Features






MoRF SequenceStartStop




NANANA