<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02773

Description Uncharacterized protein
SequenceMEFSLQSSRLWEEVVEQTKLAKEKGIDPLLWALQVSSSLGTSGIALPSTELAHVLVNYICWDNNIPILWKFLDKALMMKIIPPLLVIALLSQRVIPSRRSHPAAYRLYLELLKRHAFAFKCQINGLDYQEVMESIDATLHLSEIFDLQTTEPAILVVEFIFSIVWQLLDASLDDEGLLELTEEKVSRWAIKPQEMEIDGHDMYDEKNIVYCERLQNFNTTMAIEIIGQFLQNKATSRILYLARRNMSSHWVSFIQSLQLLGANSAALKNSKVLTSEALQELTSDSRIFLSRECKTSSRQKFHAVMAFGSLASSVSLCPGASRSDLWLPLDMVLEDAMDGYLVNTTSAVEIITGLTKTLQAINGTNWHDTFLGLWIASLRLVQRERDPIEGPMPRLDTRLCMLLSIMTLVVADLIEEEEGAPTDETEYGSTNHWKEMKFPRKRRADLVSSLQVLGDYQGLLAPPKFVVSAANQAAAKAMLFVSGINVGSAYFECVNIKDMPFSCSGNLRHLIIEACIARNLLDTSAYYWPGYVNGRINQLPYSVPAQAPGWASFMKGAPLTSVMSNALVSSPASSLAELEKIFEIAVNGSEDEKISAATILCGASLIRGWNIQEYTVKFITRLMSPPVPADFTGSDSHLIDYAPMLNVLIVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNLSWTLPSGEEISPHAVFSNAFALLLKLWRFNHPPIEHGVGDVPTVGSQLTPEYLLLVRNSHLLSSENTHKDRNKRRLSEVASSSSPEPVFLDSFPKLKVWYRQHQRCIAATLSGLVHGTTVHQTVDRLLNMMFRKINKGSQSITSVTSGSSSSSGAGIEDNSLKPELPAWDILEAVPYVVDAALTACAHGKLSPRELATGLKDLADFLPASLATIVSYFSAEVSRCVWKPVVMNGMDWPSPAANLSNVEEHIKKILAATGVDVPRLSAGGSSPATLPLPLAAFVSVTITYKIDKASERFLNLAGPALESLAADCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNSDAIVQLLKSCFTATLGLNIAPISSNGGVGALLGHGFGSHFCGGLSPVAPGILYLRVYRSIRDIVFITEEVVSLLMHSVREIACSGLPKQKIDKLKRSKNGMKYGQVSLAAAMTRVKLAASLAASLVWLSGGHGLVQSLIKETLPSWFISVHRSDRDQGSGLVAMLGGYALAYFTVLCGAFAWGVDSSSSASKRRPKILGSHMEFLASALDGKISLGCDGATWHAYVSGFVSLMVGCTPNWVLEVDVDVLRRLSKGLRQWNEEELALALLGIGGVGTMGAAAELLIEHFDS
Length1327
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.08
Grand average of hydropathy0.164
Instability index49.72
Isoelectric point6.16
Molecular weight145142.09
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02773
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     512.06|     112|     146|     978|    1089|       1
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  771-  820 (31.87/11.20)	............................................................................................SSPEPVFL..DSFPKLkvwYRQHQRCIAATLSGLV.HGTTVHQTVDR...LLNMMF................
  822-  940 (99.05/50.13)	KIN...KGSQSITSVtsgssssSGAGIEdnSLKP........EL...PaW.DILeavPyVVDAA.LTACAhgklsprelatglKDLADFLPASLATIV..................SYFSAEVSRCVwKPVVMN..........GMDWPSP.AANLSNVEEHIK
  978- 1089 (192.02/104.00)	KID...KASERFLNL.......AGPALE..SLAA........DC...P.W.PCM...P.IVASL.WTQKA.............KRWFDFLVFSASRTVFL..HNSDAI...VQLLKSCFTATLGLNI.APISSNGGVGA...LLGHGFGSHFCGGLSPVAPGIL
 1127- 1213 (97.93/49.48)	KID...KL.KRSKNG.......MKYGQV..SLAA........AM...T.R.VKL.aaS.LAASLvWLSGG.............HGLVQSLIKETLPSWFIsvHRSD........................RDQGSGLVA...MLG.GYALAYFTVL........
 1221- 1327 (91.19/45.57)	.VDsssSASKRRPKI.......LGSHME..FLASaldgkislGCdgaT.WhAYV...S.GFVSL.MVGCT.............PNW....VLEVDVDVLR..RLSKG.......LRQWNEEELALAL.LGIGGVGTMGAaaeLLIEHFDS..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     193.38|      63|     188|     253|     322|       3
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  253-  322 (85.62/94.37)	FIQSLQLLGANSAALKNSKVLTSEALQElTSDSRIFLSRECKTSSRqkFHAVmAFGSLASSvslCPGASR
  446-  508 (107.76/86.76)	LVSSLQVLGDYQGLLAPPKFVVSAANQA.AAKAMLFVSGINVGSAY..FECV.NIKDMPFS...CSGNLR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02773 with Med33 domain of Kingdom Viridiplantae
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