<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02770

Description Uncharacterized protein
SequenceMLLPYKKMCAQRKVEADIIIIESDQVANAIAEEVSKNTITRLVIGASSRGMLTRKLKKNNLSSRISACAPSFCTLYAVSKGKLTSIRPSDSEMNGSTKDDSSETSFSSKNSSDYSFSLQTELGSVATYATFRSPSLPMQRSQALSTINQTHLHSRTSSLSRSTESTQFKSPDNNHSRCQSLDNAAGNDDMSSCPNSSESREAVSQNSSRRSLQTDQQSWLPDQISTLDAQTDNNPSECQVNINFEIEKLRTELRHIREMHAAAQSETIDASQKLNTLSKRRLEEAMKLKEVCLKEEEAKELARQEKAKCEAAIREAVHVKGRADREASLRQEAEMKASHEAKEKEKLENYLTGPLQQYQKFTWDEIVSATSSFSEDLRIGMGAYGTVYKCIFHHTAAAVKVLHSKENGRTKQFQQELEILSKIRHPHLLLLLGACPEHGCLVYEYMENGSLEDRLLRKNNTPPIPWFERYRIAWEVGSALVFLHNSKPEPIIHRDLKPANILLDHNFMSKIGDVGLSMMITTDSSSTSTVYKDTGPVGTLCYIDPEYQRTGLISPKSDIYAFGMIILQLLTAKPAIALTHVVETAIDDDNLTRILDSEAGNWPVEETKELAILGLSCAELRRKDRPGLKDRVLPILEKMKEVANKARNSISNIQSAHPNHFICPISKDVMDEPCVAADGYTYERKAIEKWIETNDISPMTNLALPNKNLLPNYSLLSAILEWKSRKQ
Length727
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.524
Instability index53.02
Isoelectric point6.70
Molecular weight81493.45
Publications
PubMed=23257886

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02770
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.66|      24|      26|     281|     305|       1
---------------------------------------------------------------------------
  281-  305 (34.23/26.20)	RLEEAMKlKEVCLKEEEAKELA.RQE
  308-  332 (35.43/22.33)	KCEAAIR.EAVHVKGRADREASlRQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.74|      20|      20|     153|     172|       2
---------------------------------------------------------------------------
  153-  172 (34.73/21.53)	HSRTSSLSRSTESTQFKS.PD
  175-  195 (33.01/20.11)	HSRCQSLDNAAGNDDMSScPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.28|      17|      20|      46|      64|       3
---------------------------------------------------------------------------
   46-   63 (23.33/17.66)	ASSRGMLtRKLKKNNLSS
   69-   85 (28.96/12.36)	APSFCTL.YAVSKGKLTS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02770 with Med32 domain of Kingdom Viridiplantae
Unable to open file!