<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02767

Description Uncharacterized protein
SequenceMRPPRGRGGGFRGRGDGGRGRGRGGGGGRGGDRGGSGMKPRGGGRGGGRGRGGGRGGMKGGSKVVVEPHRHEGVFVAKGKEDALVTKNMVPGEAVYNEKRIAVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIVLYLGAASGTTVSHVSDVVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVVGGYRMPKKQKAGAA
Length298
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.407
Instability index32.39
Isoelectric point10.15
Molecular weight31747.90
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02767
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.27|      23|      25|       6|      30|       1
---------------------------------------------------------------------------
    6-   30 (43.26/20.35)	GrGGGFRGRGdGGRGRGRGGGGGRG
   34-   56 (52.00/18.41)	G.GSGMKPRG.GGRGGGRGRGGGRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.69|      15|      17|     178|     194|       2
---------------------------------------------------------------------------
  178-  194 (21.96/21.61)	AKKR.....TNVipIIEDARHP
  195-  214 (20.73/12.48)	AKYRmlvgmVDV..IFSDVAQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.34|      15|      17|     141|     155|       3
---------------------------------------------------------------------------
  141-  155 (25.11/17.17)	GAASGTTVSHVS..DVV
  159-  175 (21.23/13.46)	GVVYAVEFSHRSgrDLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.04|      55|     154|      73|     130|       4
---------------------------------------------------------------------------
   73-  130 (85.36/74.39)	GVFVAKGKEDALvtKNMVPGEAVYNEKRIAVQNEDGTKVEYRVWNPFRSKlAAAILGG
  232-  286 (96.69/72.26)	GHFVISIKANCI..DSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERD.HACVVGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02767 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRPPRGRGGGFRGRGDGGRGRGRGGGGGRGGDRGGSGMKPRGGGRGGGRGRGGGRGGMKGGSKVVVEPHRHE
1
72










Molecular Recognition Features






MoRF SequenceStartStop




1) MRPPRGRGGGFRGRGDGGRGRGRGGGGGRGGDRGGSGMKPRGGGRGGGRGRGGGR
1
55