<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02765

Description Uncharacterized protein
SequenceMEVGTVWESVLEQTKSAQDKNSDPLVWAVQLSSRLNSAGVSLPSIDLAHLLVSHICWDNHLPITWKFLEKALTANFVPPMLVLALLSTRVIPKRKFHPTAYRLYMELLRRHAFPLKCQINGLNYQKIMKSIDDVLHLSLIFGVQVSEPGLLLVEFVFSIVWQLLDASLDDEGLLELTPEKRSIWPTVTQDMEIDTADNFNETRSAHHDVLYKGNTMIAIEIIGEFLQNKVTSRILFLARRNMPSHWEAFIQQLRVLAAKSVALRNSKHITPEKLLQLTSDTHNVLSRECKRISQQVLHAVMGDGSLTSPSGQWHGTSPSALWLPIDMFLEDAMAGPQVAASGAIDRLAGLVKALQAVNGTTWHDAFLGLWIAALRLVQRERDIIEGPVPRLDTCFCMLLSITTLVVANIVEEEESELIDETDGSPSNPTKEKQTTGRCRKGLISSLQMLGDYEALLTPPQAVCSVANQAAAKAIMFHSGRTVGNGYYECMSINDMPMNCSGNLRHLIIEACISRNLLDTSAYLWPGYVNVRANIPLSVPSQVPGWSSLMKGSPLTPTLINALVATPASSLPEIEKIYEIATKGSDDEKISAASILCGASLVRGWNIQEQVVLFIISLLSPPVPADYSGSESHLIRYAPFFNVLLVGISPVDCIQIFSLHGMVPLLAGALMPLCEVFGSTAPNGSWTLPTGEELTSHAVFSNAFTILLMLWKFDHPPVEHVMRDATPVGSERSPDYLLLVRNSKLSAFGKSAKDHLKIRRMSKILNFCMEPIFMDSFPKLKRWYRQHQKCIASTLSGLVQGTTVHQIVDALLNMMFRKIGRAAQSSTSTTSGSSSSSASGAEDILARLKVPAWDILEGAPYVLDAALTACAHGRIAPRELATGLKDLADFLPATLGTIISYFSAEVTRGIWKPVFMNGTDWPSPLANLSVVLQQIKKFIAATGVDVPSLETGGSSPAMLPLPLAALVSLTITYKLDKSSERYLVLLGPAMSSLGGSCPWPCMPIISALWAQKVKRWNDFLVFTSARTVFHHNSDAVVQLLRSCFTATLGLSPSIMCSNGGVGALLGHGFGSHFSGGMAPVSPGIMYLRSHRTIRDIMFMTEEIVSLLMFSVKEIASRLSQEKMEKLKKTTFGLRYGQVSLGTAMTRVKLAASLGASLVWLSGGLSLVQSLIKETLPSWFISAHTPELDRGEPGGVVSMLRGYALAYFAVLCGTFAWGVDSVSPESRRRPKVLDSHLEFVASALDGKISLGCDYATWRAYVTGFVSLMVGCTHKWVLDVNVDVLKRLSDGLRQWNEEELAIALLGLGGATATGTAAELIVEIGA
Length1322
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy0.169
Instability index46.07
Isoelectric point6.81
Molecular weight144414.90
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02765
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.48|      37|     152|    1021|    1061|       1
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 1021- 1061 (59.98/50.23)	FTSART..VFHHNSDAVVQLLRSCFTATLglspSIMCSNGGVG
 1178- 1216 (59.50/38.98)	FISAHTpeLDRGEPGGVVSMLRGYALAYF....AVLCGTFAWG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.82|      24|     159|     991|    1015|       4
---------------------------------------------------------------------------
  991- 1014 (47.99/25.19)	SLGGSCPW..PCMPIISALWAQKVKR
 1151- 1176 (33.83/14.22)	SLGASLVWlsGGLSLVQSLIKETLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     435.27|     110|     160|     401|     511|       5
---------------------------------------------------------------------------
  303-  387 (112.57/61.17)	.....................DGSLTSPS..GQWHGTSPSALWLPI....DMFLE.DAMAGPQ.VAASGAIDRLAGlvKALQAVNGTTWHDAF.LGL...WIAAL.RL..VQRERD.IIEGP
  401-  511 (180.48/106.35)	ITTLVVANIVEEEESELIDETDGSPSNPTKEKQTTGRCRKGLISSL....QMLGDYEALLTPP.QAVCSVANQAAA..KAIMFHSGRTVGNGYYECM...SINDM.PMnCSGNLRHLIIEAC
  559-  673 (142.21/79.21)	INALVATPASSLPEIEKIYEIATKGSDDEKISAASILCGASLVRGWniqeQVVLFIISLLSPPvPADYSGSESHLI..RYAPFFNVLLVGISPVDCIqifSLHGMvPL.LAGALMPL....C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     171.90|      50|     466|     758|     808|       6
---------------------------------------------------------------------------
  758-  808 (86.50/65.91)	RRMSKILNFCMEPI..FMDSFPKLKRWYRQHQKCIASTLSGLVqGTTVHQIVD
 1225- 1276 (85.40/60.06)	RRRPKVLDSHLEFVasALDGKISLGCDYATWRAYVTGFVSLMV.GCTHKWVLD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02765 with Med33 domain of Kingdom Viridiplantae
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