<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02763

Description Uncharacterized protein
SequenceMAAKAEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPSNTVFDAKRLIGRRFTDPSVQSDMKHWPFKVIAGPGDKPMIVVTYKGEEKQFAAEEISSMVLIKMKEVAEAYLGQSVKNAVITVPAYFNDSQRQATKDAGAISGLNVLRIINEPTAAAIAYGLDKKASRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISSNARALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDSKLDKSQVNEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDDKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIERMVQEAERYKAEDEQVKKKVEAKNALENYAYNMRNTIKDDKVGGKLDPSDKGKMEKAIDETIEWLDRNQLAEVDELEDKLKELEGLCNPIIAKMYQGGGGGGDVPMGGAEAGSGGSAAGPKIEEVD
Length648
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.404
Instability index34.20
Isoelectric point5.23
Molecular weight70878.54
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02763
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.26|      38|      58|     512|     568|       1
---------------------------------------------------------------------------
  512-  550 (56.00/63.88)	DKGRLSKeEIERMVQEAERYK.AEDEQVKKKVEAKNALEN
  572-  610 (59.27/28.32)	DKGKMEK.AIDETIEWLDRNQlAEVDELEDKLKELEGLCN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.82|      51|      59|     389|     444|       3
---------------------------------------------------------------------------
  389-  444 (77.17/76.34)	EGD.DKVQDLLLLDVTPLSlGIETAG.GVMTVliprNTTIPTKKEQIFS.TYSDNQPGV
  450-  503 (75.65/58.14)	EGErARTKDNNLLGKFELT.GIPPAPrGVPQI....NVCFDIDANGILNvSAEDKTAGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.28|      18|      21|      38|      55|       4
---------------------------------------------------------------------------
   16-   33 (18.88/ 9.05)	....TTYSCVGVWQNDRveIIA
   38-   55 (33.04/20.73)	NR..TTPSYVAFTDTER..LIG
   60-   78 (25.37/14.40)	NQvaMNPSNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.28|      15|     411|     207|     221|       6
---------------------------------------------------------------------------
  207-  221 (27.38/13.52)	GGGTFDVSLLTIEEG
  620-  634 (29.90/15.37)	GGGGGDVPMGGAEAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02763 with Med37 domain of Kingdom Viridiplantae
Unable to open file!