<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02755

Description Uncharacterized protein
SequenceMQPPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPGSIPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQVYPPYTSLPSMVSSPQGYWMQHPPMGGFPRPPFVPYPTVYPGPFPSTSSGMPLPAPSSDSQPPGVRPLGMSPFAPSAAALANQSLAILTGFPPQGIDNRKLVHDVTTKVESAGNEQSDVWTAHKTDTGVVYYYNALTGESTYEKPAGFKGEPDQVTVQPTPVSVEQLAGTDWALVTTNDGKKYYYNSKTKISSWQIPNEVTELRKKQDSEVSKENAVSVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVPGSSSALDLIKKKLQDPGVPSSSPVPVVPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEALDRKDRELLLNERVLLLKRAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKCVKHEDREVLFNEYISELKAIEEKAERKDKVKKEEEEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKLFREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
Length887
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.771
Instability index55.11
Isoelectric point8.67
Molecular weight97861.75
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02755
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     285.38|      53|      58|       2|      54|       1
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    2-   43 (59.58/22.30)	..............QPP.PLPVPQGA...LSSSASFSFTPNPQLVQNAQIQPSKSDTLAT
   44-  102 (72.54/28.72)	GTQAMAASSPStvsQSG.PLPVHNSSeftMNASTTPSFAPVTSRMPTTPPFPMSSGSSGT
  104-  147 (52.87/18.99)	GTPGHPGSIPS......iQMITASAA...VDSPSSAVPGPGAPVSLNPAVQQQ.......
  156-  196 (62.51/23.76)	...............PS.MVSSPQGY...WMQHPPMGGFPRPPFVPYPTVYPGPFPSTSS
  197-  232 (37.88/11.57)	G...MPLPAPSsdsQPP.GV.RPLGM...SPFAPSAAALANQSL................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     478.01|      64|      65|     552|     615|       2
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  487-  547 (71.26/40.01)	..IMQFKEMLKE..RGVAPFSK.WEKELPKIVFD.PRFKA....IpSHSARRSLFEHYV.K..TRAEEERkeKR
  552-  615 (102.74/61.08)	AAIEGFKQLLDEASEDIDHDTN.YQTFKRKWGSD.PRFEA....L.DRKDRELLLNERV.LLLKRAAEEK..AR
  620-  681 (92.80/54.43)	AAASSFKSMLKE.KGDINVNSR.WSRVKDSLRDD.PRYKC....V.KHEDREVLFNEYI.SELK.AIEEK..AE
  686-  724 (42.21/20.57)	VKKE.......EEE.............KLK...E.REREL....R.KRKEREEQEMERV.RLKVRRKEA.....
  725-  788 (69.16/38.61)	..VASFQALLVETIK..DPQAS.WTESKPKLEKD.PQGRAanpdL.DSSDMEKLFREHIkMLFERCVND...FR
  793-  848 (76.55/43.55)	EVIT..QDATAQETEGGKTALNsWSTAKRLLKPD.PRYNK....M.PRKEREAL........WRRYAEDM..LR
  851-  885 (23.29/ 7.91)	......KSALDQ..EEEKH.TD.VK..GRSSGGDfGRYSS....G.TRRTHE......................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.43|      26|      50|     267|     292|       4
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  267-  292 (49.49/37.19)	WTAHKTDTGVVYYYNALTGESTYEKP
  319-  344 (49.93/37.59)	WALVTTNDGKKYYYNSKTKISSWQIP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.44|      25|      61|     350|     380|       6
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  350-  374 (39.52/13.53)	LRKK.QDSEVSKENAVSVPNIDVVAE
  412-  437 (36.92/12.45)	IKKKlQDPGVPSSSPVPVVPVTATHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.67|      14|      15|     448|     462|       7
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  448-  462 (19.78/15.81)	GLQSESNKDKlKDAN
  465-  478 (23.88/14.16)	GSISDSSSDS.EDAD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02755 with Med35 domain of Kingdom Viridiplantae
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