<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02755

Description Uncharacterized protein
SequenceMQPPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPGSIPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQVYPPYTSLPSMVSSPQGYWMQHPPMGGFPRPPFVPYPTVYPGPFPSTSSGMPLPAPSSDSQPPGVRPLGMSPFAPSAAALANQSLAILTGFPPQGIDNRKLVHDVTTKVESAGNEQSDVWTAHKTDTGVVYYYNALTGESTYEKPAGFKGEPDQVTVQPTPVSVEQLAGTDWALVTTNDGKKYYYNSKTKISSWQIPNEVTELRKKQDSEVSKENAVSVPNIDVVAEKGSTPISLSAPAVNTGGRDAMPLRTSVVPGSSSALDLIKKKLQDPGVPSSSPVPVVPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDHDTNYQTFKRKWGSDPRFEALDRKDRELLLNERVLLLKRAAEEKARAIRAAAASSFKSMLKEKGDINVNSRWSRVKDSLRDDPRYKCVKHEDREVLFNEYISELKAIEEKAERKDKVKKEEEEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRAANPDLDSSDMEKLFREHIKMLFERCVNDFRALLAEVITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKEREALWRRYAEDMLRKQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
Length887
PositionUnknown
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.771
Instability index55.11
Isoelectric point8.67
Molecular weight97861.75
Publications
PubMed=23257886

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02755
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     285.38|      53|      58|       2|      54|       1
---------------------------------------------------------------------------
    2-   43 (59.58/22.30)	..............QPP.PLPVPQGA...LSSSASFSFTPNPQLVQNAQIQPSKSDTLAT
   44-  102 (72.54/28.72)	GTQAMAASSPStvsQSG.PLPVHNSSeftMNASTTPSFAPVTSRMPTTPPFPMSSGSSGT
  104-  147 (52.87/18.99)	GTPGHPGSIPS......iQMITASAA...VDSPSSAVPGPGAPVSLNPAVQQQ.......
  156-  196 (62.51/23.76)	...............PS.MVSSPQGY...WMQHPPMGGFPRPPFVPYPTVYPGPFPSTSS
  197-  232 (37.88/11.57)	G...MPLPAPSsdsQPP.GV.RPLGM...SPFAPSAAALANQSL................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     478.01|      64|      65|     552|     615|       2
---------------------------------------------------------------------------
  487-  547 (71.26/40.01)	..IMQFKEMLKE..RGVAPFSK.WEKELPKIVFD.PRFKA....IpSHSARRSLFEHYV.K..TRAEEERkeKR
  552-  615 (102.74/61.08)	AAIEGFKQLLDEASEDIDHDTN.YQTFKRKWGSD.PRFEA....L.DRKDRELLLNERV.LLLKRAAEEK..AR
  620-  681 (92.80/54.43)	AAASSFKSMLKE.KGDINVNSR.WSRVKDSLRDD.PRYKC....V.KHEDREVLFNEYI.SELK.AIEEK..AE
  686-  724 (42.21/20.57)	VKKE.......EEE.............KLK...E.REREL....R.KRKEREEQEMERV.RLKVRRKEA.....
  725-  788 (69.16/38.61)	..VASFQALLVETIK..DPQAS.WTESKPKLEKD.PQGRAanpdL.DSSDMEKLFREHIkMLFERCVND...FR
  793-  848 (76.55/43.55)	EVIT..QDATAQETEGGKTALNsWSTAKRLLKPD.PRYNK....M.PRKEREAL........WRRYAEDM..LR
  851-  885 (23.29/ 7.91)	......KSALDQ..EEEKH.TD.VK..GRSSGGDfGRYSS....G.TRRTHE......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.43|      26|      50|     267|     292|       4
---------------------------------------------------------------------------
  267-  292 (49.49/37.19)	WTAHKTDTGVVYYYNALTGESTYEKP
  319-  344 (49.93/37.59)	WALVTTNDGKKYYYNSKTKISSWQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.44|      25|      61|     350|     380|       6
---------------------------------------------------------------------------
  350-  374 (39.52/13.53)	LRKK.QDSEVSKENAVSVPNIDVVAE
  412-  437 (36.92/12.45)	IKKKlQDPGVPSSSPVPVVPVTATHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.67|      14|      15|     448|     462|       7
---------------------------------------------------------------------------
  448-  462 (19.78/15.81)	GLQSESNKDKlKDAN
  465-  478 (23.88/14.16)	GSISDSSSDS.EDAD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02755 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKGSTPISLSAPAVNTGGRDAMPLRTSVVP
2) FPSTSSGMPLPAPSSDSQPPGVRPLGMSPF
3) ITQDATAQETEGGKTALNSWSTAKRLLKPDPRYNKMPRKER
4) KQKSALDQEEEKHTDVKGRSSGGDFGRYSSGTRRTHERR
5) LIKKKLQDPGVPSSSPVPVVPVTATHELNGSRAVDVKGLQSESNKDKLKDANGDGSISDSSSDSEDADSGPSKEECIMQF
6) MQPPPLPVPQGALSSSASFSFTPNPQLVQNAQIQPSKSDTLATGTQAMAASSPSTVSQSGPLPVHNSSEFTMNASTTPSFAPVTSRMPTTPPFPMSSGSSGTSGTPGHPGSIPSIQMITASAAVDSPSSAVPGPGAPVSLNPAVQQQ
374
191
795
849
411
1
403
220
835
887
490
147










Molecular Recognition Features






MoRF SequenceStartStop




1) ALDLIKKKLQ
2) ALWRRYAE
3) FGRYSS
408
837
873
417
844
878