<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02754

Description Uncharacterized protein
SequenceMALVSVVPAITEGVNSMRFCDVRAPGILSSGREIVEETVACIIEEKIYVAVGKNVDKYKSVLFWALQHSGGKKICIIHVHQPAKMIPVSEMGTKFPASKLEEQEVKAYWEIERKNMEKMLNDYLLLCLQRGVQAEKLYIERDSIEQGILEMISENRIRMLVMGGAADKHYSKYKPHKKVVDLKSKKAIFVRENAPNTCHTIWFLCKGLLIYTRKLSSDVTDTKVASSSLPASPNLESSENHFRSQSVILRQTSRVKPSTSAPDSLRRVRSENVYGHVGSTLGFPSPDGNEGLSTPWNRSDVEGSSNEWDGLSRSPQNSVLSSSSSNGMADAALVPYMGTEVNGNGLQSSLIPHAEGNFNLSSLPSIQDVTTDNTLYDQLQQVMAEATNSRREAFEEAMKRSEAEKDALVAIRKVTSEILYAQELKQRKEIEEALAKEKDKLGKMKNQRDEVRIELQAALGQKSSLENQIAESEKEVKELQEKIFSAVELLQNYKKERDELQMERDNALKEAEELRKSRAEPSGAHMHQFFTEFSFTEIEEATLNFDPSLKIGEGGYGSIYKGNLRHTTVAIKRLHSNSLQGPSEFQQEVDVLSKMRHPNLVTLIGACPDAWTLIYEYLPNGSLEDRLSCRGNSPPLSWQTRIRLATELCSVLIFLHSSKPHGIVHGDLKPANILLDANFVTKLSDFGICRLLSNNTTICCRTDPKGTFAYMDPEFLSTGELTQKADVYSFGVILLRLLTGRQALGIIKEVQYALDNGNLKNLLDPLAGDWPFVQAEQLANLALRCCEMNRRCRPDLSTDVWRVLEPMRASCGGSSSFQLGSEEQCHPPSYFICPIFQEVMQDPHVAADGFTYEAEALRGWLDSGHDTSPMTNIKLAHSNLVPNLALRSAIQEWLQQH
Length897
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.07
Grand average of hydropathy-0.390
Instability index50.44
Isoelectric point5.96
Molecular weight100350.99
Publications
PubMed=23257886

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02754
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.76|      17|      18|     290|     306|       1
---------------------------------------------------------------------------
  290-  306 (32.44/18.64)	EGLS.TPWNRSDVEGSSN
  309-  326 (25.32/13.03)	DGLSrSPQNSVLSSSSSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.61|      29|      33|     395|     427|       2
---------------------------------------------------------------------------
  364-  408 (30.30/27.24)	PSIQDVTTDnTLYDQ.LQQvmaeatnsRreafEEAMKRseaEKDAL
  409-  441 (39.31/31.61)	VAIRKVTSE.ILYAQeLKQ........R.keiEEALAK...EKDKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.87|      21|      24|     238|     258|       3
---------------------------------------------------------------------------
  238-  258 (35.85/20.16)	SENHFRSQSVILRQTSRVK.PS
  264-  285 (32.02/17.36)	SLRRVRSENVYGHVGSTLGfPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.33|      20|      33|     119|     138|       4
---------------------------------------------------------------------------
  119-  138 (34.84/25.97)	MLNDYLLLCLQRGVQAEKLY
  151-  170 (35.49/26.59)	MISENRIRMLVMGGAADKHY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.68|      44|      48|     445|     488|       5
---------------------------------------------------------------------------
  445-  488 (68.97/45.83)	KNQRDEVRIELQAALGQKSSLENQIAE.SEKEVKE.LQEKIFSAVE
  494-  539 (64.70/42.54)	KKERDELQMERDNALKEAEELRKSRAEpSGAHMHQfFTEFSFTEIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.79|      47|      85|     652|     700|       6
---------------------------------------------------------------------------
  652-  700 (78.53/61.38)	LIFLHSSKPHGIVHG...DLKPANI..LLDAnfVTKLSDFGICRLLSNNTTICC
  735-  786 (71.26/48.53)	LRLLTGRQALGIIKEvqyALDNGNLknLLDP..LAGDWPFVQAEQLANLALRCC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.01|      22|     184|     607|     633|       9
---------------------------------------------------------------------------
  607-  633 (40.41/39.13)	C.PDAWTLIYEYL.PNgsledRLSCRGNS
  792-  815 (36.61/23.16)	CrPDLSTDVWRVLePM.....RASCGGSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02754 with Med32 domain of Kingdom Viridiplantae
Unable to open file!