<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02751

Description Uncharacterized protein
SequenceMEKKEKEAENELVLPPSPTLTIGIAINGNRESKYVVKWALEKFVPEGNVMFKLLHVRAKIKLIPTPMGNLLPISQVREDVAAAYKKELEWQANEMLLPYKKMCAQRKVEADIIIIESDQVANAIAEEVSKNTITRLVIGASSRGMLTRKLKKNNLSSRISACAPSFCTLYAVSKGKLTSIRPSDSEMNGSTKDDSSETSFSSKNSSDYSFSLQTELGSVATYATFRSPSLPMQRSQALSTINQTHLHSRTSSLSRSTESTQFKSPDNNHSRCQSLDNAAGNDDMSSCPNSSESREAVSQNSSRRSLQTDQQSWLPDQISTLDAQTDNNPSECQVNINFEIEKLRTELRHIREMHAAAQSETIDASQKLNTLSKRRLEEAMKLKEVCLKEEEAKELARQEKAKCEAAIREAVHVKGRADREASLRQEAEMKASHEAKEKEKLENYLTGPLQQYQKFTWDEIVSATSSFSEDLRIGMGAYGTVYKCIFHHTAAAVKVLHSKENGRTKQFQQELEILSKIRHPHLLLLLGACPEHGCLVYEYMENGSLEDRLLRKNNTPPIPWFERYRIAWEVGSALVFLHNSKPEPIIHRDLKPANILLDHNFMSKIGDVGLSMMITTDSSSTSTVYKDTGPVGTLCYIDPEYQRTGLISPKSDIYAFGMIILQLLTAKPAIALTHVVETAIDDDNLTRILDSEAGNWPVEETKELAILGLSCAELRRKDRPGLKDRVLPILEKMKEVANKARNSISNIQSAHPNHFICPISKDVMDEPCVAADGYTYERKAIEKWIETNDISPMTNLALPNKNLLPNYSLLSAILEWKSRKQ
Length821
PositionTail
OrganismGossypium raimondii (New World cotton)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Malvales> Malvaceae> Malvoideae> Gossypium.
Aromaticity0.06
Grand average of hydropathy-0.501
Instability index48.90
Isoelectric point6.87
Molecular weight92145.82
Publications
PubMed=23257886

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02751
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.74|      20|      20|     247|     266|       1
---------------------------------------------------------------------------
  247-  266 (34.73/19.51)	HSRTSSLSRSTESTQFKS.PD
  269-  289 (33.01/18.22)	HSRCQSLDNAAGNDDMSScPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.12|      24|      81|     402|     429|       2
---------------------------------------------------------------------------
  383-  408 (33.66/20.02)	KEVCLKEEEAKELA.RQE...kaKCEAAIR
  409-  438 (28.46/25.90)	EAVHVKGRADREASlRQEaemkaSHEAKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.28|      17|      20|     140|     158|       4
---------------------------------------------------------------------------
  140-  157 (23.33/18.21)	ASSRGMLtRKLKKNNLSS
  163-  179 (28.96/12.71)	APSFCTL.YAVSKGKLTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.16|      15|      18|      42|      57|       5
---------------------------------------------------------------------------
   42-   57 (23.55/23.08)	KFVPE..GNvMFKLLHVR
   61-   77 (21.61/14.86)	KLIPTpmGN.LLPISQVR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02751 with Med32 domain of Kingdom Viridiplantae
Unable to open file!