Description | Mediator of RNA polymerase II transcription subunit 4 |
Sequence | MDSLVLKPLNSIETHLSALITSFTQTNTFANAPQLARDLISDDDDLASALSLLQRHQQNYARILHLRAEAARLQELLKDTIRKCVSFRQEISHINPSILDADSDEEEGGGDGEVAKVDYHTLLPFAARIGKHNTIAAREAEAESLRRKIAAKSKDQTSPPAPPAVLNGVEPPLATGDGAAEEAAAVEARDETHTAETTAELLRIDNTIALQRAQMGMSFPDAGILRVGALGQLQLFMERQRQQSAGAGGENEANNKAVQEALDREVERLVRETEDIAEDTGTGTLGEEMAEDTAFSPAELKRFSTFEGERGQDTATVTATASAAGQPSTSTSQAQQVPRPPKPPQPKRKLNLDLDFPDSDEEDED |
Length | 365 |
Position | Middle |
Organism | Fonsecaea multimorphosa CBS 102226 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Fonsecaea. |
Aromaticity | 0.03 |
Grand average of hydropathy | -0.590 |
Instability index | 49.25 |
Isoelectric point | 4.64 |
Molecular weight | 39495.12 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364141 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP02742 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 498.46| 163| 178| 13| 182| 1 --------------------------------------------------------------------------- 13- 182 (254.30/130.63) ETHLSALITSFTQ.TNTFA.NAPQLARDLiSDDDDL.ASALSLLQ.....RHQQNYARILHLRAEAARLQELLKDTIRKCVSFRQEISHinpsilDADSD..EEEGGGDGEVAKVDYHTLLPFAARIGKHNTIAAREAEAESLRRKIAAKSKDQTSPPAPPAVLNGVEPPLATGDGAAEE 191- 363 (244.16/114.09) ETHTAETTAELLRiDNTIAlQRAQMGMSF.PDAGILrVGALGQLQlfmerQRQQSAGAGGENEANNKAVQEALDREVERLVRETEDIAE......DTGTGtlGEEMAEDTAFSPAELKRFSTFEGERGQDTATVTATASAAGQPSTSTSQAQQVPRPPKPPQPKRKLNLDLDFPDSDEED --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) AELKRFSTF 2) KPPQPKRKLNLDLDFPDSDEEDED 3) LRRKIAAK | 298 342 145 | 306 365 152 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab