<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02714

Description "Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence"
SequenceMHEFALYGQVRKHDHRRMLQQLAGFSRMQPQDAKEIHLVFKARQPPGVDLVQSIGASHLASQQQQDMQRVKNMLNAGLYYVQLVGEVSSEKQPRLAGNGDVTMANGNGGQNPQESRMSWSFEFKDTPDAGKQAVSSRLISRTSMTDGDFVKFLDQFGYDYVSRYMVVGSRFYDHDTTIFLHKVLQLPQIAADEAISDRSFLSNIDQLPELDSSGGYALQASIDVVDGNNPELKERATRQLLAIKEALRQAVDLSPGDRLALDTRLPITSRLFIRSYTMKRSAPPQAGSVSPPLIRRKIESATTSKAVASFFKPASQKEPEKLVWRTVNHSLIIGQYNVPQKPPQPRTLPVKIAAFDLDDTLVTPNSGNKWARTAVSWKWWDPSVPGRLKSLHDDGYLLVILSNQSAISLKDNPKTLKKDMASLANFKNQASSILKQLDLPVSIYAATGQDRYRKPRVGMWEEMLEDHDLHADGAVDMAHSFYVGDAAGRDKTDKRRKDHATSDRDLAANIGIQFHTPEEFFLDETTEPYEHVFDPTKHLELAKPSCSAVNDAQASLISTPFTKNSPHELVIFCGSPGAGKSTFYWNVLQPLGYERVNQDILKTRDKCIKKAKELLQAGLSVAVDNTNADIETRAYWVKVAREFNVPIRCVRFTASTRLAEHNDAVRAMNPNTMNPENRTQLPGIAFRSFVQRFQEPKLEEGFEDIYKVDFEFKGTEEQKKLWARYWVSKFST
Length732
PositionHead
OrganismFonsecaea pedrosoi CBS 271.37
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Fonsecaea.
Aromaticity0.09
Grand average of hydropathy-0.529
Instability index40.25
Isoelectric point8.64
Molecular weight82513.39
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02714
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.77|      29|     190|     385|     418|       1
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  385-  418 (42.89/44.43)	PGRLKS......LHDDGYLLVilsNQSAisLKDNPKTLKK
  576-  610 (47.87/33.37)	PGAGKStfywnvLQPLGYERV...NQDI..LKTRDKCIKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.26|      21|      26|     273|     298|       2
---------------------------------------------------------------------------
  285-  309 (22.94/17.93)	QAGSVSPP..LIRR......kieSATTSKAvAS
  312-  343 (26.32/16.63)	KPASQKEPekLVWRtvnhsliigQYNVPQK.PP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.11|      18|     400|     218|     236|       3
---------------------------------------------------------------------------
  218-  235 (30.01/21.15)	LQASIDVVDGNNPELKER
  247-  264 (29.11/15.09)	LRQAVDLSPGDRLALDTR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.90|      11|      18|     179|     189|       6
---------------------------------------------------------------------------
  179-  189 (20.17/11.87)	FLHKVLQLPQI
  200-  210 (19.73/11.48)	FLSNIDQLPEL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02714 with Med18 domain of Kingdom Fungi
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