<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02701
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTVSKWVTLVRQCLQQRISVGEFGEFLHSYGDGIDGKRLFNALIECRRSFCAPGDPLISLYVDYVGTAGMVKVSDALLVLISKWNEMKTPPTQPVLGCYNQTLQDITMIIVSARYKTNASEVCTSLLLSSRWLSSLARHLSQQLGDSANPEHSPVIEALAFLVVSLAATDGGLEALSPANISKGDPKKGSGRELRTSLRQAMEHCLPLYPVLSTQLMERVNAVLKHINLLDDGSSQPANSSTQSSEIQALQFQVSIPDSQIVASKPGTLIYLENMLSTGSTIDDGIVVNFLSSRHQNDYQAMFIDLFTSSFRILKTQNTAPKMQLLHQQCQTFAQNKLPVLLSMISASSFNSFNTEQAITDAWHQVMPSNQGLLMTGFRFLHICSLHHLLTPHGATRLIGSEDLVANMSKGLFAKDDLVLQVSSNHTRGPKLVEELIRSDGSAGSISQALVEASSRIMHNYCQSKETQYLKDLANSILRRPATINFISLFIRPSYWLGPLCTLLDDWRWDEIHEGEAQPVYDDFGAVFLLILVSKARLGLTKSDIGIRKKDGFLAEYLERDNSEESLENLSEERKTHLGNWINALYLAEGLSDELFTNCSPHDFYPLIPTLLRQSIAANQQGKLTQDSLKAGLDYLMEPFLLPSLISALNWVGKLILEDPVSAKVVLEVLVKPPGGTDSQDIHQTILAMCAPQLRKRIECIQHQDDKFESIIKTLNQCPEFSLSVEAEAHIRDKGLFSGLQNSIVTMITSASALEIDEQLIVQNVSSMVHHAIELRGADATLRALIGVLLQLSDSHDFLFALDTVSTIVCVAGHRVRDVLRSQYNNLSPLLKKGETLLAEAIVRLHRQVEAYTNVLTVQDMGLDAFSFAQQLTNIDTANPNLDDNTAVSGGLDMQTEQVQADGIDQVLDEVAAMGNLDSNDADMSFDAFYGLHSTDMDLNDLDLDMF |
Length | 947 |
Position | Tail |
Organism | Rhinocladiella mackenziei CBS 650.93 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae>
Rhinocladiella.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.053 |
Instability index | 42.49 |
Isoelectric point | 5.07 |
Molecular weight | 104630.03 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP02701
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 172.36| 53| 449| 118| 172| 1
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118- 172 (84.24/53.88) NASEVCTSLLLSSRWLSSLARHLSQQLGDSANP.EHSPVIEALafLVVSLAATDGG
190- 221 (41.91/20.00) SGRELRTSLRQAMEHCLPLYPVLSTQLMERVN........................
587- 622 (46.21/23.33) ..................LAEGLSDELFTNCSPhDFYPLIPTL..LRQSIAANQQG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 239.79| 77| 224| 230| 313| 3
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230- 313 (115.95/81.78) LDDGSSQPANSSTQSSEIQALQfqvSIPDSqiVASKPGTLI.........YLENMLSTgsTIDDGIVVNFLSSRHQ...NDYQAMFIDLFTSSFRI
450- 538 (123.84/69.55) LVEASSRIMHNYCQSKETQYLK...DLANS..ILRRPATINfislfirpsYWLGPLCT..LLDDWRWDEIHEGEAQpvyDDFGAVFLLILVSKARL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.28| 11| 78| 856| 866| 4
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856- 866 (20.30/11.11) LTVQDMGLDAF
937- 947 (19.99/10.83) MDLNDLDLDMF
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