Description | Mediator of RNA polymerase II transcription subunit 14 |
Sequence | MNGDRPTANGERIQNGVQQGASDSSSHVGPLKQSREGQAPSTSTADRSSSYANGVPQPSNGDLGYNAANGTNQAPLEILQLIPRDNYLPMAALISRASQSCWNGLTNLVEQLAAVQVPEQSPDQAKVLPNGLPNNQTKANLDKKERLLKFANDQKADFIKLLVLLQWSRDVEEVGKTISINYWLMKRRQAYWDTIALMAGLKQESAGFQMPNPDLRVAAEVLSRGEVLKFPSLGYLPQKDLTSKQILRLLKSLNRLLSVKLALSDDLPPQLRQFHIHDGRATFIVPDEFELDVSILDENPNSQFRVVDFRYSFSPSPYIPDSLHAEIERYANSNIDRGGLQGCYFFLKELALSSKLAEYHKQVLELARSQWAGNLRVELIRRNLVVQYWSERQASKSWMEVGIASGREKREGSAQVAFPVLEIKWMRQGKKVDSLRLRQNESVLCFEDILRQIIAQHSTQILDGVYDKLVLAPLFAEAELSVEQSLSDEDPEQCSLSIQLSRSSTLQLKVDAVTGLLVISPVSEKSERLQYEVNRIHGVADEIVSKLLNFRCSVVESSVLAGISGTSWEILRAFKFSPAEIKALFGGPVVRMNLFRQSQWGVSYSLAVTHGQDGDHWWLLQQMSTSGPNSQSRFQVLRHQRIEAKEELSSAYFDRLAEYAMGLICLRRNADFLKERKEKFNLPSFPPLEKNYELPPISFDLDMARPTKSLLHGAAAETFPGEAAQNPPSKPACLQKSIQVRFGGVDRTTNRVTAIAHFQNRASAAVLKHLDESTLDSDVTLNVEDRTVTIRVKTSITEAAIPRIVDKATDLEKIVSTVEQIHRLPGLKLRSLSNSAFTIIYHQGLSKELGVSIAFGSGSQTPRLEFFPSEDNPHGLLTAQYSKLLVASRVPFATKVRDFLTSLTLTLPLLSFLYKLQRKHGLEVSRSQTTPSQEPERGLRVHVLVRSATAFAVQYFTPARHVPGDVGPNSQPHLLARLEILPHINASKKPMWLVRAALEEFQSNSRPSYSTPELRTQLRQEIFTRTDGQKWLALDSAAACMADQPEALFQAMHDLLSNWATLAAESKGEKEAKGKAEPKPEATNNLPNGNTKPNVAGKLQAAKLQRPTNPNVSRVVPGKGNPNPPKIEEYIMLD |
Length | 1134 |
Position | Tail |
Organism | Rhinocladiella mackenziei CBS 650.93 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Rhinocladiella. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.366 |
Instability index | 47.07 |
Isoelectric point | 8.79 |
Molecular weight | 126381.30 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082 |
GO - Cellular Component | mediator complex GO:0016592 IEA:UniProtKB-UniRule |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:UniProtKB-UniRule |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP02688 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 285.98| 69| 112| 826| 894| 1 --------------------------------------------------------------------------- 826- 886 (91.35/53.15) .........GLK.LR....SLSNSAFTIIYHQGLSKELGVSIAFGSGSQ.TPRLEFFP...SEDNPHGLLTAQYSKLLV 887- 945 (71.47/39.91) ASRVPFAT....kVRdfltSLTLTLPLLSFLYKLQRKHGLEV...SRSQ.TT.....P...SQEPERGL....RVHVLV 947- 1003 (60.35/32.50) .....................SATAFAVQYFTP.ARHVPGDVGPNSQPHlLARLEILPhinASKKPMWLVRAALEEFQS 1004- 1054 (62.81/34.14) NSRPSYSTpELR.TQ.....LRQEIFT..RTDG.QKWLALDSAAACMAD.QPEALFQA...MHD............... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 112.34| 32| 600| 48| 89| 4 --------------------------------------------------------------------------- 48- 79 (56.35/26.75) SSSYANGVPQPSNG..D....LGYNAANGTN.QAPLEIL 603- 637 (36.08/15.29) ..SYSLAVTHGQDG..DhwwlLQQMSTSGPNsQSRFQVL 649- 670 (19.90/12.21) SSAYFDRLAEYAMGliC....LRRNA............. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 247.72| 70| 203| 147| 240| 5 --------------------------------------------------------------------------- 93- 131 (31.50/37.30) ....................LISRaSQSCWNG...LTNLVEQLAAVQVPeqSPD...QAKVLPNG............... 166- 240 (109.09/80.07) QWS..rdVEEVGKTISINYWLMKR.RQAYWDTIALMAGLKQESAGFQMP..NPDLRVAAEVLSRGEvlKFPSLgYLPQKD 370- 441 (107.12/61.74) QWAgnlrVELIRRNLVVQYWSERQ.ASKSWMEVGIASGREKREGSAQVA..FPVLEI..KWMRQGK..KVDSL.RLRQNE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 154.60| 49| 395| 674| 728| 6 --------------------------------------------------------------------------- 674- 728 (76.87/65.40) KERKEKFNlPSfPPLEKNY....ELPPISFDLDMA...RPTksllHGAAAETFPGEAAQNPP 1070- 1125 (77.73/48.23) KEAKGKAE.PK.PEATNNLpngnTKPNVAGKLQAAklqRPT....NPNVSRVVPGKGNPNPP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 43.65| 11| 28| 273| 283| 7 --------------------------------------------------------------------------- 273- 283 (22.23/14.60) QFHIHDGRATF 303- 313 (21.42/13.81) QFRVVDFRYSF --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) PKIEEYIMLD 2) VAGKLQAAKLQRP | 1125 1095 | 1134 1107 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab