<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02605

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMNGERRTANGEQISNGFQQPAVDSTPEVGQLKQASLPEDPPPSPIDHTNGDVGSNQQTSETRAHDATHLHEQAPSEILQLISQDSYLPMAALINRASQSCWNRLLEMVIQLASMPVPEMPPEQAKLLPNGLPNNQSKVNLDKKDRLLKFSNEQKADFIKLLVLLQWSNNVEEVSKTISINYWLMQRREAYWNAIGSMALLKQESSGFQIPNPDLKTAAEVLSRGSVLNLPRLGYIPQKDLSSRQILRILQSLNRTLSIKLALSDNLPHQLRRFRIHDGRATFTVPNEFELDVSILGENQDSPFRMVDFRFSFQPSPHIPDSLHSEIELYANSNIDRDGLKGCYDFLHELALSYKLAELHKQALDLARNQWAGNLRVELIRRNLIVQYWPERQIGKSWIEVGIASGREKQKTTKTDSAPFLEIKWMRQGKKADSLQLHLNDALLCFEAILRQVLAQHTTQLLDNIYDKLGLTPLFTNAELFLEQSLSYEDPEECSLTMQLSRSSELQLKIDPVTGLVVLSPVTERTERLQYEINRVQGVADDVVSKLLNYRCSIMETKVLVGILGTCWEVLRSFKLSQAEARALFGGPVSRMNMFRQNQWTSSYTLAITHASDGDHWWLLQQVTAGATNAQARYRVLRKQTIEVKEELSSAYFDRLAEYLMGLIFLERNADFFRDRKEKFDLRPLPAFERHYELPEISFDLDMARPAFSKQPMPPVASESTSSLQPTNSLSKSPTSQKGIKVRFDGVDRSTNRVRAVAQYQYQASSAVLRRLEESVLDASVSLNPENKTVIIRVTTAVAEAAIPEIADKAMDLEKVVSTVEQIHRLPGLRLKTISNSSFTIAYHEGAPAELELRIGFPSGNQAPQLDFFPVEENPHQFLAAQYTKLIAASRGPFATRIRDFLTSLTLTLPLLTYLQRLQQKHGLNLEAKQRLDSSEREDHLRVHILVRNATAFAIQYFTPAGQAPKDVKADSQPHMLAGLEIMHHINASRKPMWLVRAALEEFQSYSMPSYSTPELGAKLKQEIFTRSDGQSKWLALDKAAACMADQPEPLLQAMHDLLWEWAKLAKASEGKVPNNQASNRAKGVLGNPNTINANLPNGNNNRPSAPMKAPPGKMHAPGGAILNGANAKAQRPPNTVAGGRSIPPNHKANANTAQKQEVIMLD
Length1162
PositionTail
OrganismCladophialophora immunda
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Cladophialophora.
Aromaticity0.07
Grand average of hydropathy-0.415
Instability index52.78
Isoelectric point7.97
Molecular weight130469.04
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU365082

GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02605
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     277.23|      85|      93|      54|     144|       1
---------------------------------------------------------------------------
   20-   49 (23.18/ 6.37)	..................................................................PAVDSTPEVGQLKQASLPEDPPPSP.IDHTN
   54-  144 (130.23/102.32)	SNQQTSETRAHDATHLHEQAPSEILQLISQDsYLpmaaLINRaSQSCWNRLLEMVI..QLAS...MPVPEMPPEQAKLLPNGLPNNQSKVN.LDKKD
  150-  239 (123.82/79.67)	SNEQKADFIKLLVLLQWSNNVEEVSKTISIN.YW....LMQR.REAYWNAIGSMALlkQESSgfqIPNPDL.KTAAEVLSRGSVLNLPRLGyIPQKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     153.59|      37|      98|     857|     893|       3
---------------------------------------------------------------------------
  857-  893 (65.63/43.31)	PSGNQAPQLDFFPVEENPHQFLAAQYTKLIAASRGPF
  932-  957 (28.92/14.65)	DSSEREDHLRVHILVRNATAFAIQYF...........
  959-  992 (59.04/38.17)	PAG.QAPK.D.VKADSQPHMLAGLEIMHHINASRKPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.99|      16|      18|     679|     694|       4
---------------------------------------------------------------------------
  679-  694 (31.89/17.45)	FDL.RPLPAFERHYELP
  698-  714 (28.10/14.52)	FDLdMARPAFSKQPMPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.91|      12|      73|     498|     512|       9
---------------------------------------------------------------------------
  501-  512 (20.12/19.40)	RSSELQLKIDPV
  524-  535 (20.79/ 8.72)	RTERLQYEINRV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02605 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNGERRTANGEQISNGFQQPAVDSTPEVGQLKQASLPEDPPPSPIDHTNGDVGSNQQTSETRAHDATHLHEQAPS
2) SEGKVPNNQASNRAKGVLGNPNTINANLPNGNNNRPSAPMKAPPGKMHAPGGAILNGANAKAQRPPNTVAGGRSIPPNHKANANTAQKQEVIMLD
1
1068
75
1162










Molecular Recognition Features






MoRF SequenceStartStop




NANANA