<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02550
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MEEDLADLDQSDQFASEAFFNQNSLQQQIQQLDPINNLGASANVTPATNPALLEQLQRRWYCGCLARVAWSRHGHIATISNDGSNVHIECIRYDGTSHSYKLHDRLTLPTLFEDAVCLAWSAHGGELAIIDGKGRIFIYHTSLVAINSLTLARSGSLDQVSDTSQPIGVAWLNQDRQDRPKNVVLHATKNDTRWTHNNARAKPLAPYWARALLLAHRNGMLTLCFQRTRSPYAIITQRVSTSDDTLYSHASFAPTVEGRMLIAFHSLKGQISISLLSMDWSGVGEYEGFPVFSLQHVPNKVSARPSGSPTTSDLYDPDAWILSHLEVLHSPEVEKMPQAPPAILAVSSGINRSINITDPGYLVSSMIQKWTVATVEQELHPLFADLPSKGSGNTGSRSVITLQGNTEKNEQLITTIHQVDGHQALIVTTQENRTDFLSSEDLSSVSYAASATETSSMAQSGFTFPFTPDLMCPGFSPNACVRADIGQDDKTQITAMENQFGQIDPEQTLDPNVDAAVAALNLAFARACWSNATIDDVLMCALQTIPSELAPMVVSSMYRTLFRDTEFINEKTQGSELERIFHKQVMGRVMAYHASLTAYCRQLPSISSTDGREGWSLSAQWAWVANNIRYTATLLFMNLRDLQNANVQVSQDFSDMLCSNIRWGLGVIRFMISAILEVGDRETNPEMFGDKGHGRLGDTAGDGTQGLIALLLNIHCSRIFLVAFIRAVRAYAKNTEPRTRHQLQMLQCIQQQTTGKGITFQAIEAMFEYRWAAQGDVEGDVAATTARQLEMMATGVVFESYQPTIKILLTKLFNSPAGLRAKMLVDRLKLFTDQVDVENVFLNHDVLGAHADDKKRKPVIYDVHRKKPILKGVLEPGGTGEPVIRRCIRCGSFSADIVVPPPDWSKTVSQLLSKCICDGQWVIEPWKKYADAD |
Length | 933 |
Position | Tail |
Organism | Exophiala sideris |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Exophiala.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.199 |
Instability index | 41.57 |
Isoelectric point | 5.82 |
Molecular weight | 103323.97 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP02550
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 260.24| 81| 575| 91| 228| 1
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69- 116 (61.59/39.05) AWSRH.GHIATISND...G..........................................................................snvhiecIRYdGTSHSYKLHDRLTLPTLFEDAV
119- 175 (80.94/112.95) AWSAHGGELAIIDGK...GRIFIYHTSLVAINSlTLARSGSLDQVSDTSQPIGVAWLNQD..................................................................
569- 692 (117.71/64.55) NEKTQGSELERIFHKqvmGRVMAYHASLTAYCR.QLPSISSTDGREGWSLSAQWAWVANNirytatllfmnlrdlqnanvqvsqdfsdmlcsnirwglgvIRF.MISAILEVGDRETNPEMFGDKG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 37.75| 11| 26| 879| 890| 2
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879- 890 (17.60/15.32) TGEPVIRRCIrC
907- 917 (20.15/11.87) TVSQLLSKCI.C
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.88| 18| 30| 753| 770| 3
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753- 770 (31.86/21.90) TTGKGITFQAIEAMFE.YR
784- 802 (27.02/17.50) TTARQLEMMATGVVFEsYQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 91.24| 26| 41| 298| 323| 4
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298- 323 (47.15/33.73) PNKVSARPSGSPTTSDLYDPDAWILS
340- 365 (44.09/31.00) PPAILAVSSGINRSINITDPGYLVSS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 138.93| 42| 498| 6| 47| 8
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6- 47 (72.05/50.88) ADLDQSDQFASEAFFNQNSLQQQIQQLDP.INNLGASANVTPA
483- 525 (66.88/46.67) ADIGQDDKTQITAMENQFGQIDPEQTLDPnVDAAVAALNLAFA
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