<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02531

Description Uncharacterized protein
SequenceMGVSSTARLPSLGAQSIPPLFSHLQHTSNAKVVARWSITIRSFRAIPVPTNAWPPANEFDSSFSPIPSQAASVTAGQNTTSSSGSSAAAQYSGPTSSGGAGSSASGAPPLTKPRTMWQVQLSDHPGVLFVIVEDSGRSSRAKVWRDWELSTKQWKKQKRRENAARREKEQKAVRDKAQLELNAAVHSTTAAADLSEIKSNEQTEAQDHKHVAVKESAEPMDEDAPTSLITDGDAKTDSEFTFSQNTAGSQQVEAGIPALDTTVSMEQAITEPAGPRPKLQLPSHTRYTASAITSSMSAMLSSLNLPPPHGAPVGTAGPGAWVPRGAAVSIEGLVLEINSQSLNALPGISPSLASLSTTEDAALITSSTEAGAGGAGRGGADWRVRVGSVVGGGGRSAGAIIEAEFLPASTLLPTSKFMHDFLFSLFPPGFIPVPPPAASVPAAGIPNVASLHGSAAASQTGSAVGTPRINNATLGTIPTSNGNALSTSAVTSGSGFSYTIGGSAGASAAPNRHLNIPVVSDQLWEEVVPQSGEGWRRRVVKRSRQMTLTARAQRRQRKEGAKPSTAHNGRVAQDNSGSTDVFGWHTFGSDDEEDASTTAHMNGDWQDQDDSQVSSSDSETEPTLDSSSGAVTGAGGLTGTAVTMQQVDEADDDDDDDRPLGAPIWSNANRTPATSTTNPTAAPATPPGATKKEDTAQLIFQGLRPDEADSTAEDGWSGIERGRRIAFQYVQMLRAEGII
Length739
PositionHead
OrganismUstilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Ustilago.
Aromaticity0.05
Grand average of hydropathy-0.429
Instability index49.40
Isoelectric point5.37
Molecular weight76915.69
Publications
PubMed=17080091

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02531
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.62|      12|      15|      76|      87|       1
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   76-   87 (20.68/10.71)	GQNTTSSSGSSA
   93-  104 (20.94/10.97)	GPTSSGGAGSSA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.02|      21|     109|     149|     170|       2
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  149-  170 (30.26/22.49)	LSTKQWKKQkRRENAARREKEQ
  531-  547 (23.79/12.48)	.SGEGW....RRRVVKRSRQMT
  548-  562 (15.96/ 6.18)	LTARAQRRQ..RKEGAK.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     361.74|     100|     120|     260|     379|       3
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  237-  345 (146.23/62.55)	DSEFTFSQNTAGSQQveAGIPAlDTTVSMEQ...AITEPAGPRPKLQ......LPSHTRYTASAITSSMSAMLSSLnLPP...PHGAPvGTAGPGAWVPRGAavSIEGLvlEINSQSLNAL
  360-  464 (147.08/65.01)	DAALITSSTEAGAGG..AGRGGaDWRVRVGS...VV..GGGGRSAGAiieaefLPASTLLPTSKF...MHDFLFSL.FPPgfiPVPPP.AASVPAAGIPNVA..SLHGS..AAASQTGSAV
  633-  689 (68.43/19.09)	...........GA....GGLTG..TAVTMQQvdeADDDDDDDRPLGA.......PIWSNANRTPATSTTN.............PTAAP..ATPPGA.........................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.36|       9|      17|      42|      52|       4
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   42-   52 (13.42/13.67)	SFRaiPVPTNA
   62-   70 (17.94/10.14)	SFS..PIPSQA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.71|      16|     394|     221|     236|       6
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  221-  236 (27.34/14.64)	DEDAPTSLITDGDAKT
  592-  606 (22.70/10.88)	EEDASTTAHMNGDWQ.
  607-  620 (21.67/10.05)	DQD..DSQVSSSDSET
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02531 with Med20 domain of Kingdom Fungi
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