<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02529

Description Uncharacterized protein
SequenceMSDASSASAGLSNRVVLDEVPLAVERVHVYTDSDAAASATDSHTILDLFDREPSLADITAEGKNIFVTPKPLSVQLGEDVRRLWAERGDFSRFRSSALHKRAHRLSADDSSDQDSECAPQDQAATEAGISSETSEKIGGTIAESQFVELRNQVLANLDVAHFNSIHAHQLLGMLIKQHRSTAVSSNNAGVAMQPVARMASPAPSVGALSNRSASITAAQTKAPLGIFSHLNHASTREEEFVLDPLAIALSRTALNTSTAVRHSNDSDQHEQEQDEFADPTSAEYALKQAQKEIESTPEFKENELREFRIVLETKRKALEDAAQLLSSAATELRSSQAGNRERWRSLIGLHGRGWGMTPGRPLLDVERFGVGESEGEGEEEEDEEEVLNSDATADDGEKEAKNQQSSIKPGKKKSKDEKQAKAAGLQGFGTPIITSDGKVKEEGARDAWIGFGLPEAPIELRRRSLAYWADVPSSVGGATTTEEVRKKLVFPDRMHRRLRVRFVLWPRVSSMQHDEGRIEWTSDPTARWQENESSDACGAPAVAPGQILDQELQQASREATDELVFGDVVAQARLLPPMFGVRLTSSSVRLVLTKRLDCVVELVRISDQNDANVSDSGQQSKDDTEEKMQLGGEKQQRYSPHASLLLAFLRMGPLRKYHAFVNATEQARRADAAARAAAIKAIATAKPKKSTSAANTATATATGNGAASTIEPASDKGGIAAGGRSTSAALSKLDSIGPIVVTLHYWSFVHRLGSVLKDFQETALQKGIKVVVQLVPITLPTSTRTGSSNLAQLTSLLSQMMDATPSLPYRNSNAPDRNAGSNGTAGTLHSIYPTHANGSTLNALQGHAKVWIHTQAGERLVCSLTFGQPSLVSVQFAGARAGAIHRKTRGVALTNKPLAVDLDALAQLMAQQLGQYL
Length917
PositionHead
OrganismUstilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Ustilago.
Aromaticity0.05
Grand average of hydropathy-0.424
Instability index46.11
Isoelectric point6.00
Molecular weight98853.24
Publications
PubMed=17080091

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02529
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     534.24|     188|     573|      12|     219|       1
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   12-  219 (256.61/216.74)	SNRVVLDE.VPLAVERVHVYTDSDAAASATDSHTiLDlfDREPSLaDITAEGKNIFvTPKP...LS.VQLGeDVRRLWAERGDFSRFRSSALHKRAHRLSA.DDSSDQDSECAPQDQAATEAGISSET.....SEKiGGTIAESQFVelrNQVLANLD.......VAHFNSIhAHQlLGMLIKQHRSTAVSSnnaGVAMqpVARMaspAPSVGALSNRSASITAAQ
  587-  792 (277.63/170.73)	SVRLVLTKrLDCVVELVRISDQNDANVSDSGQQS.KD..DTEEKM.QLGGEKQQRY.SPHAsllLAfLRMG.PLRKYHAFVNATEQARRADAAARAAAIKAiATAKPKKSTSAANTATATATGNGAAStiepaSDK.GGIAAGGRST...SAALSKLDsigpivvTLHYWSF.VHR.LGSVLKDFQETALQK...GIKV..VVQL...VPITLPTSTRTGSSNLAQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.25|      32|     360|     506|     554|       2
---------------------------------------------------------------------------
  380-  411 (53.04/23.87)	EEDEEEV.LNSDATADDGEKEAKNQ..QSSIKPGK
  512-  546 (50.21/46.04)	QHDEGRIeWTSDPTARWQENESSDAcgAPAVAPGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.80|      38|      67|     236|     273|       3
---------------------------------------------------------------------------
  236-  273 (62.03/38.22)	REEEFVLDPLAIALSRTALNTSTAVRHSNDSDQHEQEQ
  305-  342 (58.77/35.81)	REFRIVLETKRKALEDAAQLLSSAATELRSSQAGNRER
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02529 with Med17 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVSSNNAGVAMQPVARMASPAPSVGALSNRSAS
2) DAAQLLSSAATELRSSQAGNRERWRSLIGLHG
3) DEGRIEWTSDPTARWQENESSDACGAPAVAPG
4) RAHRLSADDSSDQDSECAPQDQAATEAGISSETSE
5) TSTAVRHSNDSDQHEQEQDEFADPTSAEYALKQAQKEIESTPEF
6) WGMTPGRPLLDVERFGVGESEGEGEEEEDEEEVLNSDATADDGEKEAKNQQSSIKPGKKKSKDEKQAKAAGLQGFGTPIITSDG
182
320
514
101
256
354
214
351
545
135
299
437










Molecular Recognition Features






MoRF SequenceStartStop




1) AIKAIATAKPK
678
688