<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02525

Description "Chromosome 15, whole genome shotgun sequence"
SequenceMVKSDADVIKEFNELVNMTASELEKWLKSNDSTSSGWTNGEGGETVGHNSGTKIVDILERNPEKNKEKYTEDDIKHMRKVVSYNKRHLAQEQHLKQKKSNEELQKTKSYKSLKSGSPDTTWSSASSSTFRSDVALPTALNLGKIGTSATTASTAAASAAPTRSGDSAAYLDSLEEGVNKTIDAEVDTLLSSYKELVSLATIADKDKYRVAQEAFQSEARADIMVRSTQTLGLLSEALKLSLLLSKTADPALNTEAMHLIESTEAEKLQCAHLLSHIMQLDVRNAQHLVSHLDRALVDPTTRPEAHDQSQLAPNQHIPDDDMQPVSTG
Length327
PositionHead
OrganismUstilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Ustilago.
Aromaticity0.04
Grand average of hydropathy-0.604
Instability index38.27
Isoelectric point5.51
Molecular weight35760.41
Publications
PubMed=17080091

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02525
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.65|      17|      18|     286|     302|       1
---------------------------------------------------------------------------
  266-  283 (21.75/12.35)	KLqCAHL..LSHIMQLDVRN
  286-  302 (27.96/17.77)	HL.VSHL..DRALVDPTTRP
  305-  323 (24.95/15.14)	HD.QSQLapNQHIPDDDMQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.12|      13|      16|     227|     239|       2
---------------------------------------------------------------------------
  227-  239 (20.31/12.64)	TQTLGLLSEALKL
  246-  258 (22.81/15.01)	TADPALNTEAMHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.96|      20|      24|     115|     137|       3
---------------------------------------------------------------------------
  115-  137 (30.54/29.02)	GSPDTTWSSASSStfrSDVALPT
  142-  161 (32.42/20.91)	GKIGTSATTASTA...AASAAPT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02525 with Med22 domain of Kingdom Fungi
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