<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02525

Description "Chromosome 15, whole genome shotgun sequence"
SequenceMVKSDADVIKEFNELVNMTASELEKWLKSNDSTSSGWTNGEGGETVGHNSGTKIVDILERNPEKNKEKYTEDDIKHMRKVVSYNKRHLAQEQHLKQKKSNEELQKTKSYKSLKSGSPDTTWSSASSSTFRSDVALPTALNLGKIGTSATTASTAAASAAPTRSGDSAAYLDSLEEGVNKTIDAEVDTLLSSYKELVSLATIADKDKYRVAQEAFQSEARADIMVRSTQTLGLLSEALKLSLLLSKTADPALNTEAMHLIESTEAEKLQCAHLLSHIMQLDVRNAQHLVSHLDRALVDPTTRPEAHDQSQLAPNQHIPDDDMQPVSTG
Length327
PositionHead
OrganismUstilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Ustilago.
Aromaticity0.04
Grand average of hydropathy-0.604
Instability index38.27
Isoelectric point5.51
Molecular weight35760.41
Publications
PubMed=17080091

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02525
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.65|      17|      18|     286|     302|       1
---------------------------------------------------------------------------
  266-  283 (21.75/12.35)	KLqCAHL..LSHIMQLDVRN
  286-  302 (27.96/17.77)	HL.VSHL..DRALVDPTTRP
  305-  323 (24.95/15.14)	HD.QSQLapNQHIPDDDMQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.12|      13|      16|     227|     239|       2
---------------------------------------------------------------------------
  227-  239 (20.31/12.64)	TQTLGLLSEALKL
  246-  258 (22.81/15.01)	TADPALNTEAMHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.96|      20|      24|     115|     137|       3
---------------------------------------------------------------------------
  115-  137 (30.54/29.02)	GSPDTTWSSASSStfrSDVALPT
  142-  161 (32.42/20.91)	GKIGTSATTASTA...AASAAPT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02525 with Med22 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LDRALVDPTTRPEAHDQSQLAPNQHIPDDDMQPVSTG
2) LKSNDSTSSGWTNGEGGETVGHNSGTKIVDILERNPEKNKEKYTEDDIKH
3) VVSYNKRHLAQEQHLKQKKSNEELQKTKSYKSLKSGSP
291
27
80
327
76
117










Molecular Recognition Features






MoRF SequenceStartStop




1) ELEKWLK
22
28