<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02504

Description "Unplaced genomic scaffold K443scaffold_4, whole genome shotgun sequence"
SequenceMRERKDDKQSSTSLPVYESDPPFWLPKMHSAADIGYAGFHPPRPGQDEDVLSETNVKNGFILTQPVSVETFSAQTMINENLKSEDSLAKLEELMNEVFIRRADHIPSIPQSSFRMPTRVTLNDAKRQAWFADLANPDVPLYKLGKSVPHGAKGHDLLDLLHTNNVAISRAVWLLRVFGANETAGLRNKPSYNPTLYSVEWANVVTSYIKKQLLEIALPSAPRPGLNIKQTFKGVLSDLDSREKWISRFMYCLKLLRTFYAEGLVDHRTFLVWIVQQMGSCNLAQAGFLTRLTEEYLDDILGSRALARPLVEACLSKMSEIGTASAQEFLSGTEESLKHLLQRSCLILPDAFIGPRMWLTYPSVIERVMTVDSSIRSNDWFLSQNIQDIRQSIFANFSDVRKRNEALLFRNPSPHMSIRLQAAVSDVKLLNSISSDTEMSSVSFFSNDFNDSPFFKEKLDMLLSWCVTPLQYGNHRPFAAVTLIKNWRDKACERATRRDFITPNELLQDQLFDWLDTSDVAGEPNNIRDVALFYGKLVKHELFSYANYIQRLIARGEPGLSFAEDIESRHRRFLSWIPLFQSTSSLINQRKVTLHGVRARNIPEDVTEREIRKEIRAVLPEVFGGDIRPTSETTADLLVGCNALMTGTRFEQVRTFRQWLLPALQKHVASNNDRPSALKAYLVTVELMTSTKCFHSVLDLTFCMLEHSVDSDSMTAVLNTFHRHAVIWACMGAMNAIVSALDTAHQVWKLRGSQSHPLLALLIEFDKGRYLDELSRTRITAEMSTFTNALQPVVGRPNHVPDVLPEILLLAGDPDDNAPTILANGLWIKYRMSLDWAWKTWDNTVASLRQVPSMTSDVNSRRLHALRYGTFLWRVDQHLPNGLDMDVLRWFNGPGKSVLVALSPDSWDMLKTTLVYLVVHGALKTTTILSGLVYPAWELGAFSSMEQATFPDTYLRAANDLCHRLLLQENDSGDAIPPTNLFEVQCLRTRRQVVYYEPHFPCLVASIPVLISLENNPDISGDLRCESTSLRHRLCQDGGFRQGAYRSLDVVREAFENSPYFKDMGSEILGKQMIAGLRMILCDSTDDTNLYDWPEVTRLLSPWKVAATTIQMQFQIKQLGRSLAQDITHDNASANLDKLTVMLFNHTKTAEEAYYVGEMARGAGSAVMAKFIKNGLKCIAENLSATSCDEALGIECLGSVAELLRVLIHVSSPFQDGLSSLPSLDPSTQTLFFEVIHAKLTTLQPQCLSREKLYLQRDNIILLARLLQFILNFRGSWSSRAKDLGSDLTTMVFHLALHHATGDNLDAVVYSILIDTLLFLYDGAHLFGMFHLQYLKTYFDLPEIPSDGKVGAFDPYRLYPDTPVNDLPSDLPPIYRKQCLSLLCRTTTISAIPDLVNSHRDTQGNLVLGPYVVNRPWEWIENLEPSVLDRKEGEKERDDKDSQKTKYPVKNSGSLSLDAFGARLTGDSMVPIVADGCNLRTEGNIRSFEDGTSSDSLFVRDWRETRLDLKLEVPSSLRSRPKSEVPVGTGPIHTTSLRPDPRSTPKASPVSSIVSRSSAHDFSSSARQQSPGQGSHGHSNTSMGDAHGDVDGTSAMTSRKEPTSKRKSTALLSDEVEIVEGPVAVRAGTNSKKAKTTKAPVAKAKAKRK
Length1648
PositionKinase
OrganismLaccaria amethystina LaAM-08-1
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Tricholomataceae> Laccaria.
Aromaticity0.08
Grand average of hydropathy-0.249
Instability index46.90
Isoelectric point6.53
Molecular weight184815.60
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02504
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.30|      27|     176|      42|      76|       1
---------------------------------------------------------------------------
   42-   76 (42.52/39.15)	PRPGqdedvlseTNVKNGF..ILTQPVSVETFSAQTM
  221-  249 (45.79/26.26)	PRPG........LNIKQTFkgVLSDLDSREKWISRFM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     428.17|     136|     177|    1223|    1371|       2
---------------------------------------------------------------------------
 1223- 1371 (203.76/187.48)	LDPSTQTLFFEVIHakltTLQPQCLSREKLYLQRDNiiLLARLLQFILNFRGSWSSRAkdLGSDLT..TMVFHLA..LHHATGDNLDAVVYSILIDTlLFLYDGAHLFGMFHLQYLKTYFDLP..EIPSdGkVGAFDPYRLYPDtPvNDLPSDLP
 1407- 1548 (224.41/158.95)	LGPYVVNRPWEWIE....NLEPSVLDRKEGEKERDD..KDSQKTKYPVKNSGSLSLDA..FGARLTgdSMVPIVAdgCNLRTEGNIRSFEDGTSSDS.LFVRDWRETRLDLKLEVPSSLRSRPksEVPV.G.TGPIHTTSLRPD.P.RSTPKASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.03|      49|     178|     617|     675|       5
---------------------------------------------------------------------------
  617-  675 (67.68/60.17)	VLPEV..FGGDirPtSETTADLLVgcNALMTGTRFEQVRTFRQWllpalQKHVASNNDRPS
  802-  852 (84.35/46.25)	VLPEIllLAGD..P.DDNAPTILA..NGLWIKYRMSLDWAWKTW.....DNTVASLRQVPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02504 with Med12 domain of Kingdom Fungi
Unable to open file!