<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02493
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MMISPSNQLEAVLRYAFLHAFTPEQWIEPTQECMEAADLEPELSDLLLTSLFSFTRVSDPLLESYLTLATTGKPSLIDNETSTSTANTTNSTTTAKIAPIIMPTTFLSKLMPFVESTTSRNPYQWSFLLKLLPELLDFNTDDIVSDLQKGQENPWVDLLANVFQLLSHLVAVGLYPNHYTQSIAQTPLTVTSALSFHNGSSNSNNNTTNVQPFDSQFSFQSQQSMHFDADATLDMDNTQQIMDDDEPPLAVKDTHMTDPMDVEKKASSKKTVEIDNAALAAHIMIQLIEKRGSKRIFEVRNNQRRQTGAAEVDHAPWIQCQAKLESSKHDSGSGLSSAASHNPHIQKLLLLIQRLTDRNLERRMAVHMKYHELEDEGTARAMPSAGLMGLLYHMVQIRPALDDDYIIDHLLKLQTIKGSFDESFFLEIWLTALTGLREASLNTSCQSLPSTTENAMATTASPSAKGDNDQDKNCNALVATNRLLWKSLVLVKLPHLLEKLQYKKQENDDFMTEKATTEGDELNSYEASLKELKAFSGLINACSPPACCSEFYAPDSMSSLLVDKIAFGQDENDDDDDDIMKMINDMSYTSDHNTPALTKSIRSISSNDIFTNIVNVCERYGFVRPSVAVDLTKKSGMMDIEDAADKMTPVSAIDQNIDARCEAITSNVSFSALTELLHIGLVSPIHLRKVIDFVLNLLKQKSAANDFYALAKICDALSECPCSVDLMLQLYTPADLLGPLESICTRWSPVDYELEVEDESTTRRIEGEDDLDGVQLLYSKFGNIWNFAVSVVKKFKLYRDINKVFQDGQGLLYTYFDESPVIYGVDVEDESLEPIINRWMGALAGGDGVSDELLRTSTPQELLHIVPTIMQRSILLHVHQQMDQDAFIGLISYFQKRFLNFALYGIFNYLCQELLSGHSAVALASLRQLIMSDTSLTRDFNLHPVLGSLESLLEFKRQQAAFATTKDDGEEESNAKLAQDMSELMQYIHNNNNNKLTEDHSVLFLETVTTGVTPSTLFEKAELMFKYIVKSGRSMFMSDVDADTNSLWDDQPPSKMQMVSHYLDMVLFETALEIGGGHWFVGMIVDQVLEAGRSGGAVRAAELGSCLITTPLLYSANTHNSCVNLLRCLLQDVLPSRLESCAEQNMSFFQGQTLGVFTSDCLVLMQNRYEAVRTLGKWFFEALVIDQENAATKKKPKLEDDHFAQDADGTQFAMWDERVTKSAVWRGFIKGLMSNPMIEEIWPNAFI |
Length | 1247 |
Position | Tail |
Organism | Mucor ambiguus |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina>
Mucoromycetes> Mucorales> Mucorineae> Mucoraceae> Mucor.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.207 |
Instability index | 45.60 |
Isoelectric point | 4.72 |
Molecular weight | 139539.56 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP02493
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 1071.71| 343| 393| 354| 744| 1
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191- 587 (447.43/396.97) ......TSALSFHNGSSNSNNNTTNVQ..PFDSQFSFqSQQSMHFDADATLD....MDNTQQIMDDDEPPLAVkDTHmtdpMDVEKKASskkTVEIDNAALAAHIMIQ....LIEKRGSKRIFEVRNNQRRQTGA..AE...........V.DHAPWIQCQAKLE...SSKHDSGSG..LSSAAshnphiqklllliqRLTdrnlerrmAVHMKYhELEDEGTARAMPSA.GLMGL......................LYHmvqirpalddDyiIDHLlkLQTIKG....SFDES...FFLEI...........WLTALTGLREAS...LNTSC.QSLPSTTENAMATTASPSAKGDNDQDkncnALVATNRLLWKSLVLVKLPHLlekLQYKKQenddfmtekattegdELNSYEASLkELKAFSGLInaCSPPACCSEF.YAP..DSMSSLL...VDKIAFGQDENDDDDDDIMKMINDMS
588- 982 (515.32/342.32) YTSDHNTPALTKSIRSISSNDIFTNIV..NVCERYGF.VRPSVAVDLTKKSG....MMDIEDAADKMTPVSAI.DQN....IDARCEAI...TSNVSFSALTELLHIG....LVSPIHLRKVIDFVLNLLKQKSA..AND....FYALAKICDALSECPCSVDLMLQLYTPADLLGP..LESIC.............tRWS........PVDYEL.EVEDESTTRRIEGEdDLDGVqllyskfgniwnfavsvvkkfkLYR..........D..INKV..FQDGQGllytYFDESpviYGVDVedeslepiinrWMGALAGGDGVSdelLRTSTpQELLHIVPTIMQRSILLHVHQQMDQD....AFIGLISYFQKRFLNFALYGI...FNYLCQ...............ELLSGHSAV.ALASLRQLI..MSDTSLTRDFnLHPvlGSLESLLefkRQQAAFATTKDDGEEESNAKLAQDMS
987- 1141 (108.95/52.36) YIHNNNNNKLTED.HSV....LFLETVttGVTPSTLF.EKAELMFKYIVKSGrsmfMSDVD..ADTN...SLW.DDQ....PPSKMQMV...SHYLDMVLFETALEIGgghwFVGMI.....VDQVLEAGRSGGAvrAAElgscLITTPLLYSANTHNSC.VNLLRCLL..QDVL.PsrLES.C...........................................................................................................................................................................................................................................................................................................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 156.68| 47| 1121| 69| 115| 2
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69- 115 (77.86/61.13) ATTGKPSLIDNETSTSTANTTNSTTTAKIAPIIMPTTFLSKLM..PFVE
1191- 1239 (78.82/61.99) ATKKKPKLEDDHFAQDADGTQFAMWDERVTKSAVWRGFIKGLMsnPMIE
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