<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02485

Description RabGAP/TBC
SequenceMTTLYDPPATANHNHHSNTSYYTSESEQEEGYEIAEFDLDVVDDALLNPTSSEYMDHFGFKIQVRTDDESSSDDESDFDASDNEQPPQSLTKPHPSSSTTTATATSDDDSIDTTLTTPHPHTHSSHDNQKWLSDDTTSLDKSEYQISSMPTDAASSNTDRNMANGNKSPLGNRVPILKSPPTPKADSLRNKSIQDDATQSDTSRSSKDTQRSSTSRHSILSTFNNPFKARPSSITSIQSPVTLSRPSQSFQQRQSKRYSEAVPLGMMGTPRSPASNHRHFDKLVSKFRRFSHNDHKYDSEKHILLKQEALAELNHYREKGGIENNSIDWDFWELVIDNFGALIDTQMDDMRQHLSKGGIPSPIRGLLWQIISKSRDSFDMEIEYKEILRKSVSPFEKQIQRDLTRTFPNHPYFMQESGRQALFNVAKAYSIFDQEVGYCQGLAFIIGCLLLHMSEESAFCVLIKLMGKYGLRGHFTPRMEVLHQHMYQFDNVFQQKLPVIHRHMENEGVTPSMYASQWFITLFAYRCPIELTFRVIDLLLVEGTHILVQIALAIIIRNQEKILKLKFESLVEFLCNGVFAVFGDDGNALVEDTYRVDLPARFMARLAQQYTGEEARESKSISQEDNLRRINGQLSEHIRSVEGSLQALRVENQDITKQIIDSKMTVARTEDEKQQIRHELAQVKAEFEQYKKEMSVSYEKQMNELASENRKLAERNLSLANQLTDTESMLINMKMSFAERESEFEALKRQLKDAKKL
Length757
PositionKinase
OrganismMucor ambiguus
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Mucoraceae> Mucor.
Aromaticity0.08
Grand average of hydropathy-0.683
Instability index54.93
Isoelectric point5.61
Molecular weight86539.73
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02485
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     135.60|      29|      32|      66|      94|       1
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   66-   94 (52.09/27.65)	TD...DESSSDDESDFDASDNEQP.....PQ.SLTKPH
  100-  119 (31.24/13.79)	TT...ATATSDDDS.IDTT..............LTTPH
  152-  182 (24.42/ 9.25)	.....DAASSNTDRNM.ANGNKSPlgnrvPI.LKSPPT
  185-  217 (27.86/11.54)	ADslrNKSIQDDATQSDTSRSSKD.....TQrSSTSRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.09|      16|      16|     469|     484|       2
---------------------------------------------------------------------------
  469-  484 (29.44/20.67)	YGLRGHFTPRMEVLHQ
  487-  502 (26.65/18.01)	YQFDNVFQQKLPVIHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.00|      16|      34|     319|     335|       3
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  319-  335 (27.26/22.08)	KGGIEnNSIDWDFWELV
  356-  371 (30.73/19.62)	KGGIP.SPIRGLLWQII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.81|      16|      16|     703|     718|       4
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  703-  718 (23.38/14.70)	NELASENRKLAERNLS
  721-  736 (24.43/15.69)	NQLTDTESMLINMKMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.13|      15|      18|     641|     658|       7
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  641-  655 (23.56/22.32)	VEGSLQALRVEN..QDI
  660-  676 (19.57/ 7.19)	IDSKMTVARTEDekQQI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02485 with Med13 domain of Kingdom Fungi
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