<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02478

Description Uncharacterized protein
SequenceMTTVNQDYPGHARQRRSQSPHLPPIQDSHVHAQQQQQQQQQQPQQQQQQQPQQSQHSQSAVTDAWTDAFARLQQQVQYNTNAVEDQRRHLTELHEVVRNMHSEVVSMWRNVDTISSRLDAQAGQDAKAVKADEGDIDVLTAQLQSVAGKANEVDGLKVQIEILTRRIRRLESTTAPTTSYPPTAESAPYAPHHPSSHQYSHPTPVPSRGQPGDESRQSAHPAPESRPPAPPPAHISEPRSTSDSVPEARSIPGFRPLESSTNVAGWRAAAPHVPSSQEAAPAPRHEVPASSGWAAVNTTHHVKRSASIDANMAADGSVPGSPKRQKLATLMPRAAYGDHPAVHNSPYHSTDPSQAIRPQTGDPAQQANGAQGSMRFVPFPRESNGHEQWRHGDPRGRGDRSYRGGRRSGPGEDDREHKYEGEWREWAASADGYHRHPQHAYAISPPDPHRRREVYPVGWPEHGDGHSIPGQETPSPALTDTGKKSRTKPTRNADGILIRKDGRPDMRSISSAMNLRKVHAKKEAERSAELQGGGSESGGQSRSTPGPTNGSILGDGERHSTIGSSASPRSARELSGPPGEQNEARPSPGPTSHSYDSHTSTPAALQQQQQQRERERERERELELEHAHDTIVVDTGSAQMRERQEKAVEQPRAGAGAEAHAVAV
Length664
PositionTail
Organismfungal sp. No.11243
KingdomFungi
LineageEukaryota> Fungi.
Aromaticity0.04
Grand average of hydropathy-1.147
Instability index69.57
Isoelectric point6.98
Molecular weight72630.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02478
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     338.77|      40|      40|     179|     218|       1
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    8-   46 (40.82/ 9.56)	.YPGHArQR.RSQSPHLPPI.QDSHvH....AQ.........Q..Q.Q...QQQ....QQQPQQQ.
  179-  218 (78.08/25.32)	SYPPTA.ES.APYAPHHPSSHQYSH.P....TP.........V..P.S...RGQ....PGDESRQS
  221-  259 (40.71/ 9.51)	...PAP.ES.RPPAP..PPAH.ISE.PrstsDS.........V..PeA...RSI....PGFRPLES
  329-  367 (46.27/11.86)	TLMPRA.AY.GD....HPAVHNSPY.H....ST.........D..P.SqaiRPQ....TGDPAQQA
  368-  417 (44.28/11.02)	NGAQGS.MRfVPFPRESNGHEQWRH.G....DPrgrgdrsyrG..G.R...RSG....PGEDDREH
  435-  472 (35.93/ 7.49)	RHPQHA......YAISPPDPHRRRE.V....YP.........VgwP.E...HGDghsiPGQE....
  575-  613 (52.69/14.58)	SGPPGE.QN.EARPSPGPTSHSYDS.H....TS.........T..P.A...ALQ....QQQQQRE.
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.92|      16|      22|     112|     133|       2
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  112-  133 (20.57/24.94)	DTISSRLDAQAGqdakavKADE
  137-  152 (26.35/15.63)	DVLTAQLQSVAG......KANE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.11|      26|      30|     265|     290|       3
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  265-  290 (50.23/22.69)	GWRA..AAPHV..PSSQEAAPAPRHEVPAS
  292-  321 (38.88/16.04)	GWAAvnTTHHVkrSASIDANMAADGSVPGS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.82|      18|      30|     523|     542|       4
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  523-  542 (25.36/21.01)	EAERSAELqgGGSESGGQSR
  555-  572 (31.45/18.58)	DGERHSTI..GSSASPRSAR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02478 with Med15 domain of Kingdom Fungi
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