<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02477

Description Uncharacterized protein
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
Length1340
PositionTail
OrganismMucor ambiguus
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Mucoraceae> Mucor.
Aromaticity0.03
Grand average of hydropathy-1.041
Instability index74.61
Isoelectric point6.94
Molecular weight148224.27
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02477
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|    1535.04|     308|     326|     361|     686|       1
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  126-  361 (307.33/25.94)	......................DSQLQLNlNIAG..GQQMSPL...L.....QQQQQQAQQQQQQ...QQVQQQQTASPqvapvQQLQNlssplnmNQQQQQQNMNSQN.QMRPNMFQQNMMQGRPQ.QQQPQGQQQQQQQSQAG......QPTQ......PQQQAQQQAQmLALQRTAAQAMAAAAAAGNNGSVGANGN..............................................TPAQVA........ANVNTAQ..QQIPlNV.LQNL.NMGnvnqAV....VN........M..S............PRQFQV.YL..AHQIALGQQQQQQQGQQQ.............PQQGQQQQQQQGSAA.........DNA...........N.LLG......................
  362-  675 (551.08/62.58)	MNLPNNANQNFRPPVSGVNAATSSPMQAN.NFSNtvNQQQQPLNPEMLMQHLQAQQARAQQQQQQ...QQQQQQQQHQH.....QQQQQ.......QQQQQQQQAQAQA.QAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAAAQAKQEAQQKAQQLAQQQAQQQAQ.LAAQQQAQQQLAAQQQAQQQAQQQLAQQ..............................................QAQQLAQQQQQ...QQQQTSQAPQQVP.NVSAPNL.QPG....AV....PN........LGGT............PQQQQP.LG..NRTINFQQRQAAADIVRQYDESIRSTRVRGNPIEGLSDQEKKAIQE.........HTQMMKPMYDK.IDS.LLPVFLaltsNIEATRRL...ILMK
  694- 1045 (417.54/40.04)	LDHLTKLKEQFSGYFSWVRNAVGNQQQQQ.......QQQQQQGSPAVGTPQ.QAQNTDGLQQTGTpdlSQQQQQQPPQL.....QQQQQ.......QQQQQQQQAQAQAgQLQAQQQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQA....QQQAQQQAQQQAQQQAQ.QAQQQQQQQQ....Q..QRQNTPQMANQnrmdinlphsnsttstptlqntsqhnalkrpsidlklpankkqranQSPALAAAGTP...QQPKAS..PSQQP.N....NLlQPG....AS....PNapspasvqAAGTpnqmmglaqtasPQQQHN.IE..EQQ...QQQQMNAGVQEQMGSSAAAMTAAGQ..AGMSLSQRQA............QSQM...IYQAaIASgLSPAIV....NLLPPRALqcsWLLQ
 1046- 1273 (259.10/19.65)	........................................QSAQNRIVLTPSQQQQIRAMLNERV...EAAKQQLSRQE.....QAQQQ.......QQQQQQQ..............AQ.QQQALNMRQSGGVSGSAIDLTGDNNTVVKAEEEIKQD....TSQQAAQMMH.MLQQQQQQQQ...QAQAQQ......MQS..............................................QVQQ...QQQQsmlQAKITPQSPRPVT.SVPGP....TA....AIiattPN......atTHTT............MAALRPgMGpdDKVVN..TMMYATDVLK....SVAAILVS.......ADQPREADQQltvvkdgprSTLLFEPYSIK.TDS..........................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.82|      16|      20|      70|      85|       2
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   70-   85 (28.40/19.82)	SPTTSDSD.IFAAAKNF
   91-  107 (23.42/15.00)	SRSTSKNQyILAYARKF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02477 with Med15 domain of Kingdom Fungi
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