<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02463

Description LALA0S01e12288g1_1
SequenceMEAMADGVTNTQTPDSKSHSVDKVFERLGSDDSYKDSVKQELQHVQDSILPMRLKFNELLSTLAAIDRKGESSSAETFNQIRTKLLEFISGVQQFSSDYGKLQPLFERLQEVSKSEDTIVNFVPLERLSRLNDASTTASGGKISNGNSPSANFVSTGKQAPSNAQTPLSNVPTPSSVDNAPAKKPRKPRAKKTAGPSPSSIAPQQQQQQKQQPQQHQQPQPPQQHFTPATNPSQILQSMSPMNMMSSPMNTISPMNNAAPISQIPFSAPSKPPMQQQQRHVQQTPQQQFNLDSITPANILHMSMSDHGNTPHAQQTNSQQQQQQQQPQPQQQQQHLQSSNQDFSALDINNIDLSSLNMDFLQ
Length362
PositionTail
OrganismLachancea lanzarotensis
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Lachancea.
Aromaticity0.04
Grand average of hydropathy-0.908
Instability index68.12
Isoelectric point6.76
Molecular weight39996.87
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02463
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     268.18|      44|      46|     142|     185|       1
---------------------------------------------------------------------------
   70-  104 (43.06/10.65)	..........GESS......SA...E...TFNQIRTKLLEFISGVQQFSS.DYGKLQ.P
  142-  185 (75.27/23.38)	KIS......NGNSP......SA...NFVSTGKQAPSNAQTPLSNVPTPSSVDNAPAKKP
  191-  232 (63.47/18.72)	KKT......AGPSP......SSiapQQQQQQKQQPQQHQQ.....PQPPQQHFTPATNP
  234-  273 (47.78/12.52)	QIL......QSMSPmnmmssPM...NTIS.....PMNNAAPISQIPF.....SAPSKPP
  298-  332 (38.59/ 8.89)	NILhmsmsdHGNTP......HA...Q..QTNSQQQQQQQQ.....PQPQQQ........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02463 with Med3 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RLNDASTTASGGKISNGNSPSANFVSTGKQAPSNAQTPLSNVPTPSSVDNAPAKKPRKPRAKKTAGPSPSSIAPQQQQQQKQQPQQHQQPQPPQQHFTPATNPSQILQSMSPMNMMSSPMNTISPMNNAAPISQIPFSAPSKPPMQQQQRHVQQTPQQQFNLDSITPANILHMSMSDHGNTPHAQQTNSQQQQQQQQPQPQQQQQHLQSSNQDFSALDINNID
130
352










Molecular Recognition Features






MoRF SequenceStartStop




1) RKPRAK
186
191