<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02416

Description Uncharacterized protein
SequenceMRDTPRAMSDILLQPLNDLQTLTHTLFHSLSPSQTRPPPVPPISAFLEADAALAEAAKLARQHQIKQRKNERLKDVFLALEERWREVVQELEKGKRELDAILTESEVRIKNIEVAKTGTLRSLSSFTSAPPNMPELVPGQPPPPLFYPPFPNEEKMRRGHMNDEAPLGMLGETHDAGKAPTITPRSVELPPHLAGTNPYRQDHRIPQQQIFDLDLDLNPDL
Length221
PositionMiddle
OrganismPhlebiopsis gigantea 11061_1 CR5-6
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Phanerochaetaceae> Phlebiopsis.
Aromaticity0.05
Grand average of hydropathy-0.623
Instability index65.09
Isoelectric point5.83
Molecular weight24898.12
Publications
PubMed=25474575

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02416
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.94|      13|     104|      30|      42|       1
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   30-   42 (28.03/10.26)	LSPSQTRPPPV..PP
  123-  135 (23.80/ 7.80)	LSSFTSAPPNM..PE
  136-  149 (22.11/ 6.81)	LVPGQP.PPPLfyPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02416 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRSLSSFTSAPPNMPELVPGQPPPPLFYPPFPNEEKMRRGHMNDEAPLGMLGETHDAGKAPTITPRSVELPPHLAGTNPYRQDHRIPQQQIFDLDLDLN
120
218










Molecular Recognition Features






MoRF SequenceStartStop




NANANA