<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02323

Description Uncharacterized protein
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
Length1248
PositionTail
OrganismParasitella parasitica
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Mucoraceae> Parasitella.
Aromaticity0.03
Grand average of hydropathy-1.002
Instability index67.77
Isoelectric point8.47
Molecular weight138075.36
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02323
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.83|      21|      21|     450|     470|       2
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   12-   32 (43.23/ 6.79)	QPQQQSQQQQQQQQQQQQQQQ
  161-  181 (42.60/ 6.54)	QAQQQQQQQQQQQQQQQTQQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.66|      20|      21|     498|     518|       4
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  498-  518 (36.65/ 8.50)	QQLAQQQAQQQLAaQQQAQQQ
  522-  541 (41.01/ 7.63)	QQQAQQQAQQQLA.QQQAQQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     813.61|     149|     149|     698|     846|       5
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   35-  153 (107.95/13.09)	..................................................................QQQQNPLNLNLPNEVPNANWREDltvQD.RAR.....F.VSQLGNALKHLSPTTPDNDifAAAKNFEMTL....FTRSTSK.NQYI....LAYARKFHQIKFQLQSQNGGapmLNDSQL.QLSL..NTLAGG...QQMSPL........
  156-  334 (176.17/29.53)	.....QQ....AQQqaqqqqqqqqqqqqqqqtqqqqtaspqvpavQQMQ......NL.S.SPLNMNQQQQN...MSQNQMRPNMFQQNM...MQgRPQQPnQANlTAQPQQQQQQQQQQQ...Q..AHQAQMHALQrtaaQAMASAAAAGNNgigtNGNTPAQVAANVNTAQQQIP...LNILQ..NLNMGNVNQAVV...NMSPQQFQAYLAHQ
  698-  846 (270.28/52.21)	AVGNQQQ....QQQ...............................QQQQ......QG.S.PAVNTPQQQQNTDNLQQQTTTPDLSQQQQ...QQ.HGQTP.QIH.TPQLQQQQQQQAQQQAQAK..AAQAQLQAQQ....QRQNTPQMTQQN....RGQTPQMMDTNQQQQQQQGG...LKRPSI.DLKLPANKKQRT...TQSPALSAANTPQQ
  847-  981 (157.46/25.02)	....QQKtspiPQQ...............................NRLH......QGaS.PSASSPASVAAAGTPNQMVDVTHTASPQQ...QQ.SNQE..........QQQQNAGAQQEAMAN..SA.AAISAAS....Q....AGMSLSQ....RQQQSQMI....YQAAIASG...LS.PAIvNL.LPPRALQCSwllQQSAQNRIVLTPSQ
  999- 1090 (101.75/11.60)	QLARQEQ....AQQ...............................QQQQtmnnrrQS.SgPSANAIDLTADNNVKSEQDTKPDSSQQAA...Q........MMH.LLQQQQQQQQQIQQQQQA...ILQTKL............TP..TQSP....RSATP......................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.97|      14|      29|     627|     644|      10
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  627-  644 (17.64/30.15)	LMKPMYDkiDSLlpVFLA
  657-  670 (27.33/22.02)	LMKYMFE..DQL..TMLA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.76|      16|      29|     576|     591|      11
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  576-  591 (27.56/17.94)	GNN.RTINFQQRAAAAE
  607-  623 (23.19/13.64)	GNPiEGLSDQEKAAIRE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.79|      13|      23|    1106|    1118|      12
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 1098- 1116 (16.65/ 7.70)	TN.....ttvtsaPTNTTTTTTTN
 1117- 1140 (16.14/ 7.24)	TNatmaalrpgmgPDNKVVNTMMY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02323 with Med15 domain of Kingdom Fungi
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