<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02209

Description Putative mediator of RNA polymerase II transcription subunit 26b isoform A
SequenceMKSWSLDEWRNYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDWIAERLFSCRLTRCVGCDRVELAVGADSKKEKHDGDDGDNDKSGFERDGVEFEGAGASKESKVNGDANLGDSNYSFGEAEALSDEMEEESQYVAEILRIKDVLLNPEDESEAVIFESLRRLQLMELTVDCLKATEIGKAVNPLRKHGSKDIRQLARTLINGWKEMVDEWVKATTTTAITGSEEGTPDSVNPSVVDDDEEEGLPSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRPTGPFSKNHENGRKPAFDSHVLEMRKLQPSHDTVVINRDVKSQQQAKENKAAVMPVRPNKPVTADSGPGRPPKSNVQRKSNMEPKMQQKMENNSITRRPPTAQLDKSKRSDDDAVQVKLEATKRKLQESYQQAEKAKRQRTIQVMEINDLPKQGLHRNTHFKPGYHSRHWANGRR
Length455
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.902
Instability index43.14
Isoelectric point5.45
Molecular weight51169.39
Publications
PubMed=25004933

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02209
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     155.84|      26|      26|     346|     371|       1
---------------------------------------------------------------------------
  292-  312 (18.76/ 7.87)	...GRKPafDSHVL....E....MR.KLQPSHD
  314-  343 (30.46/17.41)	VVINRDV..KSQQQA.KENkaavMPVRPNKPVT
  346-  371 (45.09/29.35)	SGPGRPP..KSNVQR.KSN....MEPKMQQKME
  374-  400 (29.16/16.35)	SITRRPP..TAQLDKsKRS....DDDAVQVKLE
  401-  426 (32.37/18.97)	ATKRKLQ..ESYQQA.EKA....KRQRTIQVME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.12|      27|      29|      62|      89|       2
---------------------------------------------------------------------------
   62-   89 (44.24/27.76)	DRVELAVGADSKKEKHDGDD..GDNDKSgF
   92-  120 (43.88/23.07)	DGVEFEGAGASKESKVNGDAnlGDSNYS.F
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.96|      15|      30|     239|     256|       3
---------------------------------------------------------------------------
  239-  256 (23.36/17.90)	DDDEEEGLPSPpldEGAF
  271-  285 (31.60/15.71)	DGMDDDGNPRP...TGPF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02209 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SQFFDGMDDDGNPRPTGPFSKNHENGRKPAFDSHVLEMRKLQPSHDTVVINRDVKSQQQAKENKAAVMPVRPNKPVTADSGPGRPPKSNVQRKSNMEPKMQQKMENNSITRRPPTAQLDKSKRSDDDAVQVKLEATKRKLQESYQQAEKAKRQRTIQVMEINDLPKQGLHRNTHFKPGYHSRHWANGRR
2) TTTTAITGSEEGTPDSVNPSVVDDDEEEGLPSPPLDEGAFFV
267
217
455
258










Molecular Recognition Features






MoRF SequenceStartStop




1) YHSRHWA
445
451