<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02208

Description Putative mediator of RNA polymerase II transcription subunit 26b isoform A
SequenceMKSWSLDEWRKYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDGIAERLFSCRLTRCVGCDRVELAVGADSKEKHDSDGDDDNDKSGYERDGVEFEGAGASKESKVNGDGGRDVNLGDSNYSFGEAEALSDEMEEESRYVAEILRIRDVLLNPEDESEAVLFDSLRRLQLMELTVDCLKATEIGKAVNPLRKHGSKDIRQLSRTLIDGWKEMVDEWVKATTTTAITGSEEGTPDSVNPSVVDDDEEEGLPSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRPTGPFSKNRENGRKPVFDSHVVEKRKSQASHDTAIIDRDVKSQQQAKKNEAVVPERPNKPVTADSGPGRPPKSNMQRKSNMEPKMQQKMENNSITRRPPTGQLDKSKRSDDSAVHVKLEATKRKLQESYQQAENAKRQRTIQVMEINDLPKQGLHRNTHFKPGYHNRHWANGRR
Length458
PositionUnknown
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.05
Grand average of hydropathy-0.970
Instability index43.01
Isoelectric point5.40
Molecular weight51463.42
Publications
PubMed=25004933

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02208
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.66|      29|      30|     326|     355|       1
---------------------------------------------------------------------------
  261-  299 (35.87/17.57)	FVTQAGSME..LSQffdgmdddgnpRPTGPFSKNRENGRKP
  326-  355 (48.29/29.87)	SQQQAKKNEaVVPE...........RPNKPVTADSGPGRPP
  357-  383 (45.50/24.04)	SNMQRKSN..MEPK...........MQQK.MENNSITRRPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.79|      27|      30|      62|      89|       2
---------------------------------------------------------------------------
   62-   89 (45.64/32.08)	DRVEL.AVGAdSKE.KHDSDGDDDND..KSGY
   92-  122 (37.15/20.76)	DGVEFeGAGA.SKEsKVNGDGGRDVNlgDSNY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.12|      29|      30|     170|     198|       3
---------------------------------------------------------------------------
  170-  198 (49.29/33.63)	QLMELTVDCLK..ATEIGKAVNPLRKHGSKD
  201-  231 (44.83/30.01)	QLSRTLIDGWKemVDEWVKATTTTAITGSEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02208 with Med26 domain of Kingdom Viridiplantae
Unable to open file!