<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02162

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSASEQSHAANFISSHTSPNQATVQPPNISSPPSSAPMSTQVSQQPTMSTTNSFPTPASSVSGNPANATSDEMDQGRKSFNLGIQDSAENSGARPAQQPTQQSTEHRPTDHDRQSSQTDSNNNFATGQDQHSTDPDAMDVDTEPSRRADTLRLDLDSLQKELTSAFHLCKSTEVVNTAFYSLTAPIVTGPDPSVDLISLYGLGSIAHSVARMDPVTGEKINRLRKSYEGKLKGLGLAGRNKPLKQEIGAPGSLRYMTLWPEEEWQNQKVHGKAIKVSDMDSALQNLQSRAMQMEPGPIPNNDFWEDILGHEKQAKNPAPGETGKKAAPAPIAGRPSTQSYAPSPRPQEAERPRPSRGRKRHYDDNSFAGYGEGFVDDDDDPGFYSNGEGTGKKKRKKVLYSYGQ
Length404
PositionHead
OrganismPenicillium italicum (Blue mold)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium.
Aromaticity0.06
Grand average of hydropathy-0.959
Instability index54.85
Isoelectric point5.96
Molecular weight43865.57
Publications
PubMed=25338147

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP02162
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.83|      11|      15|     363|     373|       1
---------------------------------------------------------------------------
  363-  373 (22.39/11.80)	DDNSFAGYGEG
  379-  389 (23.44/12.64)	DDPGFYSNGEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.59|      29|      52|      28|      56|       2
---------------------------------------------------------------------------
   28-   56 (51.08/27.91)	NISSPPSSAPMSTQVSQQPTMSTTNSFPT
   81-  109 (48.51/26.12)	NLGIQDSAENSGARPAQQPTQQSTEHRPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.41|      14|      19|     179|     192|       4
---------------------------------------------------------------------------
  179-  192 (27.12/15.21)	FYSL..TAPIVTGPDP
  199-  214 (21.29/10.65)	LYGLgsIAHSVARMDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.15|      20|      21|     229|     248|       6
---------------------------------------------------------------------------
  229-  248 (33.28/21.63)	GKLKGLGLAGRNKPLKQEI.G
  251-  271 (33.87/22.14)	GSLRYMTLWPEEEWQNQKVhG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02162 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSASEQSHAANFISSHTSPNQATVQPPNISSPPSSAPMSTQVSQQPTMSTTNSFPTPASSVSGNPANATSDEMDQGRKSFNLGIQDSAENSGARPAQQPTQQSTEHRPTDHDRQSSQTDSNNNFATGQDQHSTDPDAMDVDTEPSRRADTLRLDLD
2) VHGKAIKVSDMDSALQNLQSRAMQMEPGPIPNNDFWEDILGHEKQAKNPAPGETGKKAAPAPIAGRPSTQSYAPSPRPQEAERPRPSRGRKRHYDDNSFAGYGEGFVDDDDDPGFYSNGEGTGKKKRKKVLYS
1
269
156
401










Molecular Recognition Features






MoRF SequenceStartStop




1) FWEDILGHE
2) KRHYDDNSFAGYGEGFVDDDDDPGFYSNGEGTGKKKRKKVLYSYGQ
303
359
311
404