<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02135

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMPGVIMADGPQNGARTDHDRGQGPQTMAENVASMPTKPGVAKEMTIPMRPRMNDLPDEIVHITQGFVPLSLLVTRLAQHTHNSLQEKIAELAKMALPASALNGTTNHSAFFFFYFFFLYLHKKGALLHFAQDMHAKWIKALVITEWSRNASLVSKLIDLKFHIDQQRILFDGCLDDMVNVKRDLTFARMPSPDLKTALQVLSAGNAPWVPDLGYIEPAPLTAQEKLKWINDLDTLLSLRLNIEDYDNIPPQFRDYRIESGRVTFRVATEFEVELTIADEDFEKQFWFIDFRYLFGPSAATIPDSLRSYLETCVNDVLSKDGLGGCYKFLHEFVLTSKINELKRQAIELSKTSWSSTLVVEPLNRALAIQYWSSRTNTTGLKNWVLIAIESGKTSNSQTEASTTSRLVAKWYRDNKEVKDAALELDLQNLSAESLLKDVVGRHIDHILSSIRDMLSDAPRFKQRVANMSLHLSRSDPAACALITEVTPNHSTSLIMEPTTGIFAIKPQSKFSVQYEMQLNNGKNVAEDGVLCVENVRCAVLEDALNRSGTTMGWTTHKAPLTQEEFRLVTKLRDWTRTIWIQKEGWGPNWYIATVLSLSGDEWWLLEINRNEPGRACKFQTKLPVSKGQPSLSDRFWNNLTLFATGSIARITDLRELYRQRIKSRSSDIKSSTSQQVRIPALEMDLSALVPSMAVDSASNKQSWASNIVIVQFGGLQPAPKSSNPEAETPLLMCTTDAILKVRNPGKFTALDGNVDHDLSYNPAKGEFGLRIRHAVGEPILAILQSRIKSIDRFVNFLEAVERSDGAIVSEEVSLQRVAFKYGAWSMALDLSRGDIDISIDEHNPHLRVLDLMRVLVNSDGGITALLGWLPASLSAMEALDSMETAWEDVKAGTAQFAVKTLGWMSVRYSILGKPDVLTLEVQRKLRRGEAWWHVWRSDKNAEGDMFSAPLKAVWVKNGAKWIGLSTGAAGKPDGGVVEMMLATDEAIRRAVGEPKKEEADDVVLLE
Length1006
PositionTail
OrganismTorrubiella hemipterigena
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Clavicipitaceae> Torrubiella.
Aromaticity0.08
Grand average of hydropathy-0.215
Instability index39.90
Isoelectric point6.13
Molecular weight112527.40
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU365082

GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02135
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.84|      33|      34|     866|     898|       1
---------------------------------------------------------------------------
  866-  898 (56.18/35.67)	LGWLPASLSAMEALDSME.TAWEDVKAGTAQFAV
  901-  934 (55.66/35.28)	LGWMSVRYSILGKPDVLTlEVQRKLRRGEAWWHV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.88|      52|     213|     722|     778|       2
---------------------------------------------------------------------------
  722-  778 (84.60/61.23)	SNPEAETPLLMCTTDAILkVRNPGKFTALDGNVdhdlSYNPAKG..EFGL....RIRHAVGEP
  937-  994 (84.28/48.20)	SDKNAEGDMFSAPLKAVW.VKNGAKWIGLSTGA....AGKPDGGvvEMMLatdeAIRRAVGEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     249.60|      65|     258|     143|     218|       3
---------------------------------------------------------------------------
  143-  207 (106.06/69.28)	ITEWSRNASLVSKLIDLKFHIDQQ...RILFDGCLDDMVNVKRD..LTFAR.MPS..PDLKTALQVLSAGNAP
  407-  469 (66.98/38.24)	VAKWYRDNKEVK...DAALELDLQ...NLSAESLLKDVVGRHIDhiLSSIRdMLSdaPRFKQRVANMSL....
  488-  552 (76.55/58.12)	....NHSTSLIMEPTTGIFAIKPQskfSVQYEMQLNNGKNVAEDgvLCVEN.VRC..AVLEDALNR.SGTTMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.90|      22|      32|     234|     256|       4
---------------------------------------------------------------------------
  234-  256 (36.09/22.46)	TLLSLRLNIEDYDnIPPQFR..DYR
  268-  291 (35.81/18.06)	TEFEVELTIADED.FEKQFWfiDFR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02135 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MPGVIMADGPQNGARTDHDRGQGPQTMAENVASMPT
1
36










Molecular Recognition Features






MoRF SequenceStartStop




NANANA