<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02102

Description Uncharacterized protein
SequenceMTQVSNATEGEEQPQVQPLELPKVSDKTEPLPAQEEVMEKPDDAMDEDLVTPATVFRIKLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRTTIWTQPSRGPANLVRDASCWQLEHEWRQDIAVVTKWLSGLSAYRWLSSKSNSSNSKPNFEEKFLPQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSQNSSPPKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTTTNNGVPAPLNPPNWSGFAPLAAYLFSWQEFLLSELKQGKKQTDQDVNDTIPLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPTRGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVLHQIFGNPTASFSGQAPTQTVWLSKVDTSISPTSDFKSNQSAVSGPNSDLRKLSGAYIDKAKKVCFDPFDLPSDVRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAIAAPAFSSTSCCSASVWHDVNKDCTMLRIIRVLPPAAPSNQLKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVEPALIPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNIVASPTPSSASPATSQGAQSSTTSTTGSTQMQAWVQGAIAKISSTTDGVTSSTPNPISGSSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLSRYIGISQRNADANSQKPQPSVPGKVEEINSNSVKPVQNIIKPDESQIVRASQLVTGAKGAEEGLAGRSRIGTGNAGQGYTSEEVKVLFLILIDLCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGPNDDNSKLSNSSDPLDLNSLENCNVYYGANGLWPRKRRMSERDAAFGLNTSIGLGAFLGIMGSRRDVVTAVWKTGLEGVWYKCMRCLRQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTWVRVV
Length1237
PositionTail
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.08
Grand average of hydropathy-0.210
Instability index45.23
Isoelectric point6.19
Molecular weight134173.98
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02102
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     340.08|     106|     113|      85|     196|       1
---------------------------------------------------------------------------
   85-  144 (89.02/44.45)	..........................................................................WCGKLNAIACASETCARIPSSNANP....PF...WIPIHIVIPER.PT...ECAVFNVIADSPRDSVQFIE
  145-  258 (152.02/97.36)	WSPTSCPRALLIANFHGRTTIWTQPSRGPAnlvrdASCWQLEhEWRQDIAVV....................tkWLSGLSAYRWLS...SKSNSSNSKP....NFeekFLPQQSQTSARwPNflcVCSVFS....SGSVQLHWSQ
  418-  489 (52.98/24.02)	FDPTRGGSVIAIVIVEGQYMSPYDPDEGPS.....ISGWRVQ.RWESSLQPVvlhqifgnptasfsgqaptqtvWLSK...................................................................
  848-  898 (46.06/18.37)	..........................................................................WV..QGAIAKISSTTDGVTSSTPNPisgsST...FMPISINTGTF.PG...TPAV.RLIGD..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.21|      42|     113|     785|     826|       2
---------------------------------------------------------------------------
  785-  826 (74.52/37.91)	HFITRLRRYASFCRTLASHAVTAGTG.SNRNIVA.SPTPSSASP
  900-  943 (69.69/35.04)	HFLHRLCQLLLFCFFFRRTQLSRYIGiSQRNADAnSQKPQPSVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.35|      24|     316|      59|      82|       3
---------------------------------------------------------------------------
   59-   82 (44.01/30.85)	KLKQPRSNLQHKM..SVPELC...RNFSA
  365-  393 (33.34/21.43)	ELKQGKKQTDQDVndTIPLHCspvSNFSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     427.84|     117|     586|     509|     657|       4
---------------------------------------------------------------------------
  509-  657 (180.90/162.35)	GPNSD...LRKLSGAYIDKAK.KVCFDPFDLPSDVRTL...ARIVYSAHG........GEIAV....AF...LCGGVHIFSGPNFAPVENYQINVGPAIAAPAFsstsccsASVWHdvnkdctmlRIIRVL.......PPAApsnqlkANSSTW.ERaiaeRFWWsllvgVDWWdAVGC
  693-  768 (80.90/33.65)	GPSLDrikCRLLEGTNAQEVR.AMVLD.....MQARLL...LDML..GKG........IESALinpsAL...LSEPWHA.SGETLSGIDPEAMAVEPAL................................................................................
 1098- 1226 (166.04/93.76)	GPWSD...VDDL.GPNDDNSKlSNSSDPLDLNS.....lenCNVYYGANGlwprkrrmSERDA....AFglnTSIGLGAFLG.....IMGSRRDVVTAVWKTGL.......EGVWY.........KCMRCLrqtsafaSPGA......TNDTTQnER....ETWW.....ISRW.AYGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.34|      43|     740|     298|     343|       5
---------------------------------------------------------------------------
  298-  343 (74.47/56.73)	MH.VAGVPIVNPSTVvvwEVTPGPGNGFQATPKTTTNNGV...PAPLNPP
 1040- 1086 (68.88/43.38)	LHyIDGNYTVLPEVV...EASLGPHMQNMPRPRGADAAGLllrELELHPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.73|      20|     921|      32|      53|       7
---------------------------------------------------------------------------
   32-   53 (31.65/24.66)	PAQEEVmeKPDDAM...DEDLVTPA
  956-  978 (30.08/16.64)	PVQNII..KPDESQivrASQLVTGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02102 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTQVSNATEGEEQPQVQPLELPKVSDKTEPLPAQEEVMEKPDDAMD
2) SNRNIVASPTPSSASPATSQGAQSSTTSTTG
1
811
46
841










Molecular Recognition Features






MoRF SequenceStartStop




1) EEQPQVQPLELPKV
11
24