<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02089

Description Uncharacterized protein
SequenceMEQLKKTFLPYFIKAYEPFRKVVHQEGLHRRGLGKTIERILRFFQSSKEKIIASYTKEKFIRCLQYIEQSGNTIKSNINVVNKPSSLHDGQPGLSGSRINHPVQQSGDNVKLHCQSVIRTTTGSGSSSVAPQEIGSIRSKLHPQWIHGSGNTPFTYRSGISLNPHLNSNFSHVAERPRPTNPCTYPLHGRASPPPSSSIVGLEKISPNVTYHSSSNFHFRPHCNPYQLLHSKAEMIAEPTSLGINGQLSTYQAHNRLLKAVGSSSEEALRAAVSGITSVGYMEDAIIDPQCRAKVTNLRLIDGFGSSNNMKRKINAMALNNIPSPSSEILGSEETVTSRTKKLKKLSDSSLLEEMRNINKQFIETVLELDLDENLNQRLANAGTVLRYSYSAVSDGTNSVKLPVLTMKLLVPLDYPEDYPVFLSKFDLSSSNVDEESRNLSNGAISMLRAFLRTAPECVSLEDYARAWDECARSVLSEYVRRAGGGSFSARYGSWEDSVVAA
Length502
PositionTail
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.431
Instability index53.77
Isoelectric point9.18
Molecular weight55593.19
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02089
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.53|      33|      40|     181|     217|       1
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  142-  170 (34.17/14.93)	....HPqwIHGSG...NTPFTyRSGISLN...P....HLNSNF
  181-  217 (56.16/41.33)	NPctYP..LHGRA...SPPPS.SSIVGLEKISPnvTYHSSSNF
  224-  252 (29.20/12.23)	NP..YQ.lLHSKAemiAEPTS.LGING..QLS...TYQ.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.99|      25|      26|     444|     469|       2
---------------------------------------------------------------------------
  444-  469 (39.95/33.13)	AISMLRAFLRTAPECVSLEDYArAWD
  472-  496 (44.04/31.22)	ARSVLSEYVRRAGGGSFSARYG.SWE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.73|      11|      41|     256|     266|       3
---------------------------------------------------------------------------
  256-  266 (17.28/ 8.76)	RLLKAVGSSSE
  299-  309 (18.45/ 9.84)	RLIDGFGSSNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.78|      13|      28|      93|     107|       4
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   93-  107 (18.14/19.18)	GlSGSRINHPvQQSG
  123-  135 (23.64/13.73)	G.SGSSSVAP.QEIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.56|      11|      16|     357|     367|       5
---------------------------------------------------------------------------
  357-  367 (18.92/14.72)	NINKQFIE..TVL
  374-  386 (13.64/ 8.56)	NLNQRLANagTVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02089 with Med15 domain of Kingdom Viridiplantae
Unable to open file!