<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02087

Description Uncharacterized protein
SequenceMPYANSPRSSANVMNTPSPQQQTQQQQQQQLQQVQQRKLMLPQHQHLLAQQQMRQSSMQGIGQIHGQHQMQFSQPLAHQQFQGRQMSSGHVQHGITQSQLGQGNQMNRHLHQFSGAANSSLFNVAQTTPTSQMIPNISATMSSQPLMSRMQHGLSGTNLQRNHASQILSDQTCVYSSSVFMGGGSASGMMPMQQQQQAQQQQQQQAQLASQGAFGNMQANAQSLQSGLVPLQNMQQTHPNFGQQRQQNQQ
Length250
PositionHead
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.04
Grand average of hydropathy-0.917
Instability index69.86
Isoelectric point11.79
Molecular weight27749.55
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02087
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     252.09|      61|     173|      10|      74|       1
---------------------------------------------------------------------------
   11-   74 (106.88/29.12)	ANVMNTPSPQQQTQQQQQQQLQQVQQRKLmlpQHQHLLAQQQMRQSS...MQGIGQIH...GQHQMQFSQ
  135-  193 (80.54/15.45)	PNISATMSSQPLMSRMQHGLSGTNLQRN....HASQILSDQTCVYSS.svFMGGGSAS...GMMPMQ...
  195-  250 (64.66/11.68)	.........QQQAQQQQQQQAQLASQGAF.....GNMQANAQSLQSGlvpLQNMQQTHpnfGQQRQQNQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.01|      23|      30|      78|     100|       2
---------------------------------------------------------------------------
   78-  100 (43.50/22.23)	H.QQFQGRQMSS.GHVQHGITQSQL
  109-  133 (33.51/15.27)	HlHQFSGAANSSlFNVAQTTPTSQM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02087 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ANAQSLQSGLVPLQNMQQTHPNFGQQRQQNQQ
2) GSASGMMPMQQQQQAQQQQQQQAQLASQGAFGNM
3) MPYANSPRSSANVMNTPSPQQQTQQQQQQQLQQVQQRKLMLPQHQHLLAQQQMRQSSMQGIGQIHGQHQMQFSQPLAHQQFQGRQMSSGHVQHGITQSQLGQGNQMNRHLHQFSGAANSSLFNVAQTTPTSQMIPNISATMSSQPLMSRMQHGLSGTNLQRNH
219
184
1
250
217
163










Molecular Recognition Features






MoRF SequenceStartStop




NANANA