<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02083

Description ATP-dependent DNA helicase
SequenceMNPEEVLEELLNVEVQINEVQAEINLLLERQDNLYQRKSELQSLLELCNETEDSVSQGTGTSTNSENWSGSFKWDSEADDVKLNIFGISSYRANQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPALLYDGIALVVSPLLSLIQDQVMGLAALGISASMLTSATSKEDEKLIYKNLEKGEGSMKILYVTPEKVSKSKRFMSKLEKCYHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPNAPVIALTATATQRVQNDLVEMLRIPKYVKFVSTVNRPNLFYMVREKSSVSKVVIDQIAEFIQESYPNNESGIIYCFSRKECEQVAKELRLRGISADHYHADMDSVAREKVHMRWSNSRLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYYRPGDVPRQSSMVFYENSGLENLYGIVQYCQSRRQCRRSVFFRHFAEPLKDCNGMCDLCAVASEVKEVDVCSHARVIISILQDVQKSNQKMTMLQLVDKLKTKHNGLVSDLRKEEIEQLIIQLLLDRVLKEEFQHTAYATNAYVTVGPLARQVLQGKKVVKIEISGKQKVTGVKSKRKSVAPSGLECKLDKLRKELASIDGGIFPHSVLSTQQIVVLSAQKPTSLDQLETMIGKVKAEKYGDRILEEIEKWSIGQNPNASEEEQEEDENRTPKRPKTIDTHVVIESSDEEA
Length708
PositionUnknown
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-0.344
Instability index43.66
Isoelectric point6.24
Molecular weight79713.31
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02083
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.25|      10|      16|     398|     408|       1
---------------------------------------------------------------------------
  398-  408 (15.21/12.26)	YYQeSGRAGRD
  417-  426 (21.04/12.09)	YYR.PGDVPRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.65|      21|     123|     306|     329|       2
---------------------------------------------------------------------------
  306-  326 (40.40/20.92)	FIQESYPNNESGII.YCFSRKE
  431-  452 (35.25/15.83)	FYENSGLENLYGIVqYCQSRRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.77|      18|      18|      19|      36|       4
---------------------------------------------------------------------------
   19-   36 (29.35/17.80)	EVQAEINLLLERQDNLYQ
   40-   57 (29.42/17.87)	ELQSLLELCNETEDSVSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     253.16|      68|     130|     471|     538|       5
---------------------------------------------------------------------------
  471-  538 (108.64/91.94)	GM.CDLCAVASEVKEVD..VCSHARVIISILQDVQKSNQKMTMLQLVDKL..KTKHNGLVSDLRKEEIEQLII
  548-  597 (56.67/43.76)	..........EEFQHTA..YATNAYVTVGPLARQVLQGKKVVKIEISGKQ..KV..TGVKS..KRKSV.....
  601-  670 (87.84/72.66)	GLeCKLDKLRKELASIDggIFPHS..VLSTQQIVVLSAQKPTSLDQLETMigKVKAEK.YGDRILEEIEKWSI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02083 with Med34 domain of Kingdom Viridiplantae
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