<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02080

Description Uncharacterized protein
SequenceMNWLEHSKAHKDFSCQKKFLCSNFLFCLPEQKPSTTGSTDTGNLACQMQNLQRIQRSQVEKAWNALSNFQISCRHYAKPGNTRQVKDVFSDHPADTGRITSNSLSDANASSHHKKVHRNFSEYSVDTTKPSSFGSNLSASSNIQVMEGQNDVDGNNMARLRTINNSHFQRVDGSVIFATNQKNICSSFLEDEDDKIIENIDVDQIVEQYQSQSACTPQPSVSKLPPITPIIEKDNVARQEESNYPDELCTNCSHGFKIELCPEASSHLQELKDRLISISNDLLDNVNNLSPVQIDKLRQERVHLNKQIQLLERHISLDAVNEERRRSHLFATTVTPKTFHFETPPGVEFRTDAKLNTSYVHQDFEPRRIEPWNSMGSSYVDERFGMSSGPVEREPYIPKVIDVNYIEGSNDKKWSSRNFSWTKELEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQDQIMHLIQANISAAYLSANMEWSEQQEIFRDLSSDCSKYKLLYVTPEKVAKSDVLLRHLESLNARHLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPKIPVLALTATATASVKEDVVQALGLINCIIFRQSFNRPNLWYSVIPKTKKCVDDIDKFIKENHFDECGIVYCLSRMDCEKVAERLQECGHKAAFYHGSMDPAQRSFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMISQGATEQSPLVSGYNRTNLGSSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDPGNCKKTCDNCLKSTNLIEKDVTDISKQLVDLVRSMGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGTGKHLLKSEASRILHHLVIEDILVEEVRKSDIYGSVSSLLKVNETKVRSLLNGGQRIKLRFPSSTKTNKLSKFEMTPAKGSLVSGKMYPNIDTPAQPQSEVDVQLSAELYSSLRMLRTNLVKEAADGVMAYHIFGNATLQQISRRVPRSKEELLDINGIGKAKVSKYGDRILETIESTIKEFYGAGKNGSNSNDSNDSGKRRRGGNKDKDEYLDENDATKSFDRSKKRATNIQNKDPNVHNSSMPEHPDQFFDSELDFDDSHYEIRDLELNNNLDHGNDGRVLPSWS
Length1189
PositionUnknown
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.577
Instability index49.12
Isoelectric point7.11
Molecular weight134621.21
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02080
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.10|      33|      36|     242|     277|       1
---------------------------------------------------------------------------
  242-  277 (53.97/40.53)	SNypdELCTNCSH..GFKIELCPEASSHLQ...ELKDRLIS
  279-  316 (46.12/25.97)	SN...DLLDNVNNlsPVQIDKLRQERVHLNkqiQLLERHIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.16|      12|      36|      64|      75|       2
---------------------------------------------------------------------------
   64-   75 (22.83/14.01)	NALSNFQISCRH
  102-  113 (21.33/12.60)	NSLSDANASSHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.57|      21|      36|     796|     817|       3
---------------------------------------------------------------------------
  796-  817 (32.15/26.81)	GRILETnTENLLRMVSYCENDV
  835-  855 (38.42/26.76)	GNCKKT.CDNCLKSTNLIEKDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.63|      19|      29|      83|     101|       4
---------------------------------------------------------------------------
   83-  101 (33.47/19.78)	RQVKDVFSDHPADTGRITS
  114-  132 (33.15/19.52)	KKVHRNFSEYSVDTTKPSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.23|      25|      29|     680|     705|       5
---------------------------------------------------------------------------
  430-  451 (31.13/16.41)	KKVFGNHSFRPNQREVINATMS...........
  683-  713 (41.28/21.19)	KAAFYHGSMDPAQRSFIQKQWSK..deiniiCA
  714-  746 (37.82/23.16)	TVAFGMGINKPDVRFVIHHSLPKsiegyhqeCG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.03|      36|      38|    1057|    1093|       6
---------------------------------------------------------------------------
 1057- 1093 (57.06/43.74)	DINGIGKAKVS..KYGDRILETIESTiKEFYGAGKNGSN
 1096- 1133 (56.97/38.73)	DSNDSGKRRRGgnKDKDEYLDENDAT.KSFDRSKKRATN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.17|      15|      29|     941|     955|       7
---------------------------------------------------------------------------
  941-  955 (24.06/16.46)	LLKVNETKVR.SLLNG
  972-  987 (21.11/13.48)	LSKFEMTPAKgSLVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.65|      34|     163|      13|      49|       8
---------------------------------------------------------------------------
   13-   49 (56.97/42.89)	FSCQKKFLCSNFlfcLPEQKPSTTGSTDTGNLACQMQ
  177-  210 (57.68/34.56)	FATNQKNICSSF...LEDEDDKIIENIDVDQIVEQYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.82|      11|      36|     586|     597|       9
---------------------------------------------------------------------------
  586-  597 (15.70/14.46)	ILKQKFPKiPVL
  622-  632 (21.12/13.82)	IFRQSFNR.PNL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02080 with Med34 domain of Kingdom Viridiplantae
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