<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02079

Description Uncharacterized protein
SequenceMLSLHAENEEPSSYTLKEHVAQAFEELERQKPFELLNQYVLILAKLGVQAQKVWIETNNVERGIVEIISQYSIKWLVMGLDTEGYNMKRSTGLKSKKAFYVSQQAPICCHIWFVCRGRLIYSREARMGRLKNSEIGINYTNHLRPESVTCKNFADAQEKECAGDRISRFRYQGLVDQKLSNNGNLGTSRTTLLLKNEGVKEGHPVSQSGLQEASMNVKSIKDFEGVKAWVEKDAVGAEFKAELLENSCMEEVKKRKEMEELLEKEKREVERINKERAELLKELQHVDEQKSVLDRKASEYQCDMEELEKKMFAAVDLLVSFKDKRDKLLIEREGAMDKLRKLKNIVKREPSRYRNAEMPMFSFVEIIEATRNFDPSWKIGEGRHGSVYKGLLRHMDVALKMFPSYGSHSQSAFQYEVEVLSRVRHPNLVSIIGACPESRLIVYENLKNGSLEDHLACKNHNCPLPWQTRIRIAADICSALIFLHYSDPCIVHGDIKPSKILLDTNFIAKLGGLGISRLIPQEEKAFNSASMCNISKENNPYIDPECLETGKFTPESDVYSIGVILLRILTGRTPPGIVEDVKCAIENDNIVVVLDSSAGDWPHDLAEQLALVALRCCKKEKLERPDLVSELWCVLEPMRSIASASCSSSKKHRVPAHFTCPIFQEIMKDPLIAADGFTYEADAIRGWFKSGHNTSPMTNLKLEHCNLVPNYALLNAIQEWQHQL
Length724
PositionTail
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.387
Instability index38.99
Isoelectric point6.61
Molecular weight82394.83
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02079
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     192.54|      49|      50|     322|     371|       1
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  264-  318 (47.61/22.63)	KEKREveRINKERAELLKE..LQHVdeqKSVLDRKASEYQcdmeELEKKMFAA.VDLL...
  322-  370 (79.26/44.17)	KDKRD..KLLIEREGAMDK..LRKL...KNIVKREPSRYR....NAEMPMFSF.VEIIEAT
  374-  423 (65.67/39.12)	.DPSW..KIGEGRHGSVYKglLRHM...DVALKMFPS.YG....SHSQSAFQYeVEVLSRV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.39|      46|      49|     532|     580|       2
---------------------------------------------------------------------------
  485-  538 (65.26/45.31)	YSDP.CIVHGDIKPSKillDtnfIAKLGGLGISRLIPQEEKAFNSAsmCNISKEN
  541-  589 (72.14/47.99)	YIDPeCLETGKFTPES...D...VYSIGVILLRILTGRTPPGIVEDvkCAIENDN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02079 with Med32 domain of Kingdom Viridiplantae
Unable to open file!