<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02076

Description Uncharacterized protein
SequenceMQRYHPAGCTSAVNNSAIGGPSARDTVRADSSSLPGNFPLNSRRPAPLTAYKLKCEKESLNNRLGPPDFHPQTSSCPEENLTREYVQSGYRETVEGLEESREILLTQVQAFSKHLVIKCKDATRKRLRAINDSRAQKRKAGQVYGVPLSVSLLTKPGIFPEQRPCGEDFRKKWIEGLSQQHKRLRSLADNVPHGYRKRALFEVLIRNNVPLLRATWFIKINYLNQVRPNSASISCGAFDKAQLSRTEFWTKDVVDYLECLVEEFFSKSNSHLTPPNKDRSPQMFSVGFTHTKGDPPAVFDGEEPSLHFKWWYVVRLLLWHQAEGLLLPSLIVDWVLGQLEENDVLEILELLLPIIYGVLDTIVLSQTYVRTLVRISIRFIRDSFPGGSDLVDNSRRVYTTSALVEMLRYLVLAVPDTFVALDCFPFPRCVVSHTVNDGNFGSKVPEDVTKLRYTSAEVASPFRSKSIDFQYQSSAFDNVVSSIRKCADNLAKAVNPKFPVCSVAKAVHALDKSLLHGDIGVAYKYLFEDCCNGSINEGWFEEVSPCLRMSLKWIQTVNVAFACSVFFLCEWATCEYRDFWSAAPRELKFTGGKDFSQVYIATRLLKMKARDLQSVSGIKFETSSGLNSTKGSSHQNSLFGRKPVGNLFEPKSRLKKLGGNGSLDLFESPGPLHDILVCWIDQHEVQKGEGFKRIQLLIVELVRAGIFYPHSYVRQLIVSGIMDTNGPAVDSDKRRRHQQILMHLPGSFVRATLDDGKIAQGAQLVEVINVYSKERRLVLHGLVYEQLSDISSANISSNRKRKIPTSDKVSSSVTSVNQLKSIPPFSNTGSTKRLKSEVDIEALKEAISLLLRFPNSSSLPTDTGLDDPSGTGKKSFVSVYAKVDTAEATHGCEDCKRAKKQKVSDERNLYLHGSSPIPSDDEDMWWVKKGPKSSEALKVDPPVKTTKPVSKGRRKTQSLAHLAASRIEGSQGASTSHVCDNRVACPHHRSGIEGDATRAIDSSKISGDIASIGKSLRRLRLTEKRAISSWLITAVKQFIEETEKTIAKAGQFGRSLTTVDDRITVRWKLAEDQLSSILYLSDVCNDFVSGVKFLLWLLPKVLISSNSTMNSRRSILLLPKNVENQVCEVGEAYLLSSLRRYENILVAADLISEALSSVTHRAMAIMASNGRISGSAVVVYARYLLKKYSSMPSVVEWEKSFKATCDKRLIAELDPGSTLDGELGLPLGVPAGVEDLDDFFRQKIGGGRLSRVGMNMRELVGRQVDDAFHYLLGKDRKVFSGNAPKVLATDKSDEGYQIAQKIITGLMECIRHTGGAAQEGDPSLVSSAVSAIVGNLSTTVSRIADSIVGGSSNIPSASGSLDFAKRILSIHVTCLCLLKEALGERQSRVFEIALATEAFSALAGVYPSGKTSRSQFQSLADPHDSNTHVFGDNSKVIGKATKVAAAISALVIGAIIQGVCSLERLVALFRLKEGLDFIQFVRTTRSNANGNTRTIGMHKIESSIEDYVHWFRLLVGNCRTVFDGLIVELLGEPSIVALFRMQRLLPLSLVLPPAYSIFSFVVWRPFILNSAVTVREDVNQLCQSLTIAISDIVRHLPFRDICLRDSQGFYNHLMMDTSDVEFAAILELNGSDIPTKSMAFVPLRARLFLNAIIDCKLPSSMYNQDDGSRISGVGDGKGQYPERKMKLLDRLVHVLDTLQPAKFHWQWVELRLLLNEQAIIEKLETRDMSLADAVRLASPSPEKVAASDNEKNFIEIILTRLLVRPDAASLFSDVIHLFGRSLEDSMLLQAKWFLGGQDVLFGRKSIRQRLTNIAESKGLSTKTMFWKPWGWCTSGSDTSYLEEGEVVEEGTDSRKYNQKSVPMLDNEVLHSGQQYVTERALIELVLPCIDQSSEESRNTFANDLIKQLNNIEQQINAVTSGTSKQTGSVPSGIEGPTSKGSSRKMKGGSPGMARRSTGSTDSPLPSPAALRASMSLRLQLILRLLPVILEDREPSGRNMRHMLASVILRLLGNRMVHEDANLTFCPTHSLMVKKEVESPSEASFAAFADLPGECLFGRMLLILHGLLSSCQPSWLGLKNAAKSTNETSKDSSSLVRELAESLQNELHCMQLPDMIRWRIQAAMPIPLPPGRCFLSYQPPTIPHSALSSFQSSISTPGHGSGNSSMPQGSKISSPRVVPSAPGKSKPLPPQQDHDTEIDPWLLLEDGAGSSQSSSNSAVIGSGEHANFRASYCLKGAVRVRRTDLTYIGAMDDDS
Length2254
PositionKinase
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.07
Grand average of hydropathy-0.206
Instability index46.59
Isoelectric point8.80
Molecular weight249066.06
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02076
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     337.05|     104|     939|     905|    1017|       1
---------------------------------------------------------------------------
  716-  808 (65.89/34.08)	..........LIVSGIMDTNGPAvdsDKRRRHQQILMHLPGSFVRAtlddgkiAQGA.........QLVEVIN.....................................................vysKERRLVLHGlvyeqlsdissanissnrKRKIPTSDK
  809-  922 (115.64/64.33)	VSSSVTSVNQLKSIPPFSNTGST...KRLKSEVD.........IEA.......LKEAislllrfpnSSSLPTDTglddpsgtgkksfvsvyaKVDTAEATHGCE.DCKRA.KKQKV............sDERNLYLHG..................SSPIPSDDE
  927- 1015 (126.50/94.84)	VKKGPKSSEALKVDPPVKTTKPV...SKGRRKTQSLAHLAASRIEG.......SQGA.........STSHVCDN..................RVACPHHRSGIEGDATRAiDSSKISGdiASIGKS.......................................
 1931- 1966 (29.02/ 9.70)	....................................................................................................SGIEGPTSKG.SSRKMKG..GSPGMA.....RRSTGST..................DSPLPS...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.61|      26|     125|     532|     559|       6
---------------------------------------------------------------------------
  532-  559 (44.83/30.54)	NGSINegWFEEVSPCLRMSLKWIQTVNV
  660-  685 (49.78/27.93)	NGSLD..LFESPGPLHDILVCWIDQHEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.07|      21|      64|    1634|    1657|       9
---------------------------------------------------------------------------
 1634- 1657 (30.01/37.13)	PTK.SMAFVPLraRLFLN..AIIDcKL
 1700- 1723 (32.06/23.19)	PAKfHWQWVEL..RLLLNeqAIIE.KL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.72|      14|     210|    1549|    1562|      10
---------------------------------------------------------------------------
 1549- 1562 (26.53/17.21)	LVLPPAYSIFSFVV
 1762- 1775 (25.19/15.91)	LVRPDAASLFSDVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.84|      50|     939|     455|     510|      13
---------------------------------------------------------------------------
  455-  510 (67.80/59.85)	SAeVASPFRS.KSIDFQYQSSAfDNVVSSIRKCADNlAKAVNpkfPVCSVAKAVHAL
 1400- 1450 (81.05/48.03)	SA.LAGVYPSgKTSRSQFQSLA.DPHDSNTHVFGDN.SKVIG...KATKVAAAISAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.18|      35|     135|     136|     173|      14
---------------------------------------------------------------------------
  136-  173 (54.01/44.14)	QKRKAGQVYGVPLSVSLLTKPGIFPEQRPcGEDFrkKW
  276-  310 (66.17/41.37)	NKDRSPQMFSVGFTHTKGDPPAVFDGEEP.SLHF..KW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.90|      36|      58|    2126|    2161|      19
---------------------------------------------------------------------------
 2126- 2161 (69.57/40.80)	PLPPGRCF.LSYQPPTIPHSALSSFQSSISTPGHGSG
 2186- 2222 (61.34/35.01)	PLPPQQDHdTEIDPWLLLEDGAGSSQSSSNSAVIGSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02076 with Med12 domain of Kingdom Viridiplantae
Unable to open file!