<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP02075

Description Uncharacterized protein
SequenceMAVVSAMQATTPRVGPINYAEASPIMISSSREIVEEPVGAISEDIIYVAVGKDVKECLSVLRYALKSSRGKKICLLHVHVPAQMIPLMGTKFPANSLEKEEVKAYHEFEKQNLPRVMNEYILYCLQEGVHADKLYGEAEYIEKGIVDMISMHRIDKLVMGAAVDKCYSRKMVDLKSKKAIYVRSQAPAFCHIEFICKGNRICTREGMSDEAQVETIISSPQISPDAESSEVTHRRSQSLPLGQVNSREVGSPSSSLRPKRRSLLLDHFRGNILDPSSPDIKNGVHAAKHLDVNEAMDEWGLLTRRSPSERSENSIRSPRGVIDMAPSPFFRVELCANGLEDGKTSDNLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKGKLESIKTQLNEEMEKLRIAQDEKASLERDLLESDLTAKELEQKILSAVELLQSYKREREELQIHRDSALREAEELRKNQSTGRDLTQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRANLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRDEMLNSETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAVGIAKEVQYAMGNGKLESILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGRLSIQLGSAEHSQPPSYFICPIFQEIMQDPHVAADGYTYEAEAIRGWLDSGHETSPMTNLRLENRNLVPNRALRSAIQEWLHHN
Length875
PositionTail
OrganismCucumis sativus (Cucumber)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Cucurbitales> Cucurbitaceae> Benincaseae> Cucumis.
Aromaticity0.06
Grand average of hydropathy-0.394
Instability index51.10
Isoelectric point6.10
Molecular weight98577.54
Publications
PubMed=19881527
PubMed=19495411
PubMed=20565788
PubMed=22047402

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP02075
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.72|      27|      30|     391|     417|       1
---------------------------------------------------------------------------
  391-  417 (41.86/28.81)	EGLYAEELKQRKEVEQELAK.EKGKLES
  419-  446 (37.85/25.30)	KTQLNEEMEKLRIAQDEKASlERDLLES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.63|      24|      28|     465|     491|       2
---------------------------------------------------------------------------
  468-  491 (38.98/28.10)	KREREELQIHRDSALREAEELRKN
  493-  516 (41.64/21.43)	STGRDLTQFFTEFPFREIEEATKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     364.09|      93|     465|     173|     279|       3
---------------------------------------------------------------------------
  173-  269 (147.39/106.45)	DLKSKKAIYvRSQAPAFCHI.EF.ICkgnRICTREGMSDEAQ..VETIISSPQ.....ISPDAESS.EVTHRRSQSLPLGQVNSREVGSPSSSLRPKRRSLLLDHFR
  639-  736 (123.37/76.50)	DLKPANVLL...DANFVCKLgDFgIC...RLLSRDEMLNSET..LVWRTDNPKgtfayMDPEFLSSgELT.TKSDVYSFGIILLRLLTGRSAVGIAKEVQYAMGNGK
  796-  858 (93.34/56.62)	QLGSAE....HSQPPSY.....F.IC................piFQEIMQDPH.....VAADGYTY.EAEAIR......GWLDSGHETSPMTNLRLENRNL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.00|      12|      28|     580|     591|       4
---------------------------------------------------------------------------
  580-  591 (24.65/14.35)	PEAW...VLIYEYLC
  607-  621 (18.35/ 9.06)	PLSWqtrIRIATELC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP02075 with Med32 domain of Kingdom Viridiplantae
Unable to open file!